publish-book #97
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| name: publish-book | |
| on: | |
| workflow_dispatch: | |
| env: | |
| NB_KERNEL: python | |
| NMA_REPO: instructor-course-content | |
| NMA_MAIN_BRANCH: main | |
| PREREQ_INTRO: ComputationalNeuroscience | |
| ORG: neuromatch | |
| # This job installs dependencies, build the book, and pushes it to `gh-pages` | |
| jobs: | |
| build-and-deploy-book: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| persist-credentials: false | |
| fetch-depth: 0 | |
| ref: ${{ github.head_ref }} | |
| - name: Get commit message | |
| run: | | |
| readonly local msg=$(git log -1 --pretty=format:"%s") | |
| echo "COMMIT_MESSAGE=$msg" >> $GITHUB_ENV | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install CI tools | |
| run: | | |
| BRANCH=`python -c 'import os, re; m = re.search(r"nmaci:([\w-]+)", os.environ["COMMIT_MESSAGE"]); print("main" if m is None else m.group(1))'` | |
| wget https://github.com/NeuromatchAcademy/nmaci/archive/refs/heads/$BRANCH.tar.gz | |
| tar -xzf $BRANCH.tar.gz | |
| pip install --upgrade pip | |
| pip install -r nmaci-$BRANCH/requirements.txt | |
| mv nmaci-$BRANCH/scripts/ ci/ | |
| rm -r nmaci-$BRANCH | |
| rm -rf $BRANCH.tar.gz | |
| echo ci/ >> .gitignore | |
| - name: Install XKCD fonts | |
| if: "!contains(env.COMMIT_MESSAGE, 'skip ci')" | |
| run: | | |
| sudo apt-get update -yq | |
| wget http://archive.ubuntu.com/ubuntu/pool/universe/f/fonts-humor-sans/fonts-humor-sans_1.0-4_all.deb | |
| sudo dpkg -i --force-all fonts-humor-sans_1.0-4_all.deb <<< 'yes' | |
| sudo apt install -fy | |
| rm -f $HOME/.matplotlib/fontList.cache | |
| - name: Copy tutorials from course-content repo | |
| run: | | |
| BRANCH=`python -c 'import os, re; m = re.search(r"course-content:([\w-]+)", os.environ["COMMIT_MESSAGE"]); print("main" if m is None else m.group(1))'` | |
| wget https://github.com/NeuromatchAcademy/course-content/archive/refs/heads/$BRANCH.tar.gz | |
| tar -xzf $BRANCH.tar.gz | |
| mv course-content-$BRANCH/tutorials tutorials/ | |
| mv course-content-$BRANCH/projects projects/ | |
| mv course-content-$BRANCH/requirements.txt . | |
| rm -r course-content-$BRANCH | |
| rm -r $BRANCH.tar.gz | |
| - name: Copy tutorials from precourse repo | |
| if: "!contains(env.COMMIT_MESSAGE, 'skip precourse')" | |
| run: | | |
| BRANCH=`python -c 'import os, re; m = re.search(r"precourse:([\w-]+)", os.environ["COMMIT_MESSAGE"]); print("main" if m is None else m.group(1))'` | |
| wget https://github.com/NeuromatchAcademy/precourse/archive/refs/heads/$BRANCH.tar.gz | |
| tar -xzf $BRANCH.tar.gz | |
| mv precourse-$BRANCH/tutorials/W0D* tutorials/ | |
| cat precourse-main/tutorials/materials.yml tutorials/materials.yml > out.yml | |
| mv out.yml tutorials/materials.yml | |
| mv precourse-$BRANCH/prereqs/ . | |
| rm -r precourse-$BRANCH | |
| rm -r $BRANCH.tar.gz | |
| - name: Install dependencies | |
| run: | | |
| pip install -r requirements.txt | |
| pip install jupyter-book==0.14.0 ghp-import | |
| pip install jupyter_client==7.3.5 # downgrade jupyter-client to fix hangs | |
| - name: Build the book | |
| run: | | |
| python ci/generate_book.py instructor | |
| jupyter-book toc migrate /home/runner/work/instructor-course-content/instructor-course-content/book/_toc.yml -o /home/runner/work/instructor-course-content/instructor-course-content/book/_toc.yml | |
| ln -s ../tutorials book/tutorials | |
| ln -s ../projects book/projects | |
| ln -s ../prereqs book/prereqs | |
| # ln -s ../tatraining book/tatraining | |
| jupyter-book build book | |
| python ci/parse_html_for_errors.py instructor | |
| - name: Commit book | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| ghp-import -n -c "instructor.compneuro.neuromatch.io" -m "Update course book" book/_build/html | |
| git checkout -f gh-pages | |
| - name: Publish to gh-pages | |
| uses: ad-m/[email protected] | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| branch: gh-pages | |
| force: true |