Fix tests - int32 sparse graph #363
Workflow file for this run
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| name: Test | |
| on: | |
| push: | |
| branches: # on all branches except `typos` | |
| - '**' | |
| - '!typos' | |
| paths-ignore: | |
| - 'docs/**' | |
| - 'scripts/**' | |
| - 'data/**' | |
| - '.git*' | |
| - 'README.md' | |
| pull_request: | |
| branches: | |
| - '**' | |
| schedule: # Every Monday at 04:00 UTC | |
| - cron: '0 4 * * 1' | |
| jobs: | |
| caching: | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| os: [ubuntu-latest] | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: bash -elo pipefail {0} | |
| name: Cache for ${{ matrix.python-version }} on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get week number | |
| run: echo "WEEK=$(date +'%V')" >> $GITHUB_ENV | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| create-args: python=${{ matrix.python-version }} | |
| environment-file: environment.yml | |
| cache-environment: true | |
| cache-environment-key: W${{ env.WEEK }} | |
| run-tests: | |
| needs: caching | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| os: [ubuntu-latest] | |
| submodule: | |
| - { | |
| name: "Metrics & Graph Stats", | |
| pytest_args: "tests/metrics/ tests/test_graph_stats.py" } | |
| - { name: "Approaches", pytest_args: "tests/partitioning/approaches/" } | |
| - { name: "Partitioning Base", pytest_args: "tests/partitioning/test_base.py" } | |
| - { | |
| name: "Partitioning Rest", | |
| pytest_args: "tests/partitioning/ --ignore=tests/partitioning/approaches/ --ignore=tests/partitioning/test_base.py" | |
| } | |
| - { name: "Population", pytest_args: "tests/population/" } | |
| - { name: "Attribute", pytest_args: "tests/test_attribute.py" } | |
| - { name: "Plot", pytest_args: "tests/test_plot.py" } | |
| - { name: "Utils", pytest_args: "tests/test_utils.py" } | |
| fail-fast: false | |
| name: ${{ matrix.submodule.name }} (${{ matrix.python-version }} on ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get week number | |
| run: echo "WEEK=$(date +'%V')" >> $GITHUB_ENV | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| create-args: python=${{ matrix.python-version }} | |
| environment-file: environment.yml | |
| cache-environment: true | |
| cache-environment-key: W${{ env.WEEK }} | |
| - name: Install superblockify | |
| run: pip install --no-build-isolation --no-deps -e . | |
| - name: "Run tests ${{ matrix.submodule.name }}" | |
| if: matrix.python-version != '3.12' || matrix.os != 'ubuntu-latest' | |
| run: | | |
| pytest ${{ matrix.submodule.pytest_args }} | |
| - name: "Run tests ${{ matrix.submodule.name }} with coverage" | |
| if: matrix.python-version == '3.12' && matrix.os == 'ubuntu-latest' | |
| run: | | |
| pytest --cov=superblockify ${{ matrix.submodule.pytest_args }} | |
| env: | |
| COVERAGE_FILE: ".coverage.${{ matrix.submodule.name }}" | |
| - name: Store coverage file | |
| if: matrix.python-version == '3.12' && matrix.os == 'ubuntu-latest' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-${{ matrix.submodule.name }} | |
| path: ".coverage.${{ matrix.submodule.name }}" | |
| coverage: | |
| name: Merge Coverage | |
| needs: run-tests | |
| strategy: | |
| matrix: | |
| python-version: ["3.12"] | |
| os: [ubuntu-latest] | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Load coverages | |
| uses: actions/download-artifact@v4 | |
| id: download | |
| with: | |
| path: coverage | |
| pattern: 'coverage-*' | |
| merge-multiple: true | |
| - name: Install coverage | |
| run: pip install coverage | |
| - name: Merge coverage files | |
| run: | | |
| cd coverage | |
| coverage combine | |
| - name: Upload coverage report to Codecov | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |