Fix code style issues with Black #357
Workflow file for this run
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| name: Test | |
| on: | |
| push: | |
| branches: # on all branches except `typos` | |
| - '**' | |
| - '!typos' | |
| paths-ignore: | |
| - 'docs/**' | |
| - 'scripts/**' | |
| - 'data/**' | |
| - '.git*' | |
| - 'README.md' | |
| pull_request: | |
| branches: | |
| - '**' | |
| jobs: | |
| caching: | |
| strategy: | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| label: linux-64 | |
| prefix: /usr/share/miniconda3/envs/my-env | |
| # For later compatibility with Windows and macOS: | |
| # - os: macos-latest | |
| # label: osx-64 | |
| # prefix: /Users/runner/miniconda3/envs/my-env | |
| # | |
| # - os: windows-latest | |
| # label: win-64 | |
| # prefix: C:\Miniconda3\envs\my-env | |
| name: Cache for ${{ matrix.label }} | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: sb_env | |
| use-mamba: true | |
| - name: Show environment info | |
| run: | | |
| conda info | |
| conda list | |
| - name: Cache Conda env | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: | |
| conda-${{ runner.os }}--${{ runner.arch }}--${{ | |
| hashFiles('environment.yml') }}-${{ env.CACHE_NUMBER }} | |
| env: | |
| # Increase this value to reset cache if etc/example-environment.yml has not changed | |
| CACHE_NUMBER: 0 | |
| id: cache | |
| - name: Update environment | |
| run: # Install if cache not found | |
| mamba env update -n sb_env -f environment.yml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run-tests: | |
| needs: caching | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| submodule: | |
| - { | |
| name: "Metrics & Graph Stats", | |
| pytest_args: "tests/metrics/ tests/test_graph_stats.py" } | |
| - { name: "Approaches", pytest_args: "tests/partitioning/approaches/" } | |
| - { name: "Partitioning Base", pytest_args: "tests/partitioning/test_base.py" } | |
| - { | |
| name: "Partitioning Rest", | |
| pytest_args: "tests/partitioning/ --ignore=tests/partitioning/approaches/ --ignore=tests/partitioning/test_base.py" | |
| } | |
| - { name: "Population", pytest_args: "tests/population/" } | |
| - { name: "Attribute", pytest_args: "tests/test_attribute.py" } | |
| - { name: "Plot", pytest_args: "tests/test_plot.py" } | |
| - { name: "Utils", pytest_args: "tests/test_utils.py" } | |
| name: ${{ matrix.submodule.name }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: sb_env | |
| use-mamba: true | |
| - name: Use cache for ${{ matrix.submodule.name }} | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| fail-on-cache-miss: true | |
| key: | |
| conda-${{ runner.os }}--${{ runner.arch }}--${{ | |
| hashFiles('environment.yml') }}-${{ env.CACHE_NUMBER }} | |
| env: | |
| CACHE_NUMBER: 0 # Same as in caching job | |
| - name: Show environment info | |
| run: | | |
| conda info | |
| conda list | |
| conda config --show | |
| - name: "Run tests ${{ matrix.submodule.name }} with coverage" | |
| run: | | |
| pytest --cov=superblockify ${{ matrix.submodule.pytest_args }} | |
| env: | |
| COVERAGE_FILE: ".coverage.${{ matrix.submodule.name }}" | |
| - name: Store coverage file | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage | |
| path: ".coverage.${{ matrix.submodule.name }}" | |
| coverage: | |
| name: Merge Coverage | |
| runs-on: ubuntu-latest | |
| needs: run-tests | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Load coverages | |
| uses: actions/download-artifact@v3 | |
| id: download | |
| with: | |
| name: 'coverage' | |
| - name: Install coverage | |
| run: pip install coverage | |
| - name: Merge coverage files | |
| run: coverage combine | |
| - name: Upload coverage report to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |