Merge pull request #158 from zoghbi-a/update-sciserver-instructions #229
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| name: Testing notebooks and publish HTML | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: '0 5 * * 1' | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| tests: | |
| name: ${{ matrix.name }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| # Don't cancel jobs if one is failing | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - name: Linux with the oldest version of dependencies | |
| os: ubuntu-latest | |
| python: '3.8' | |
| toxenv: py38-test-oldestdeps | |
| - name: OSX | |
| os: macos-latest | |
| python: '3.11' | |
| toxenv: py311-test | |
| - name: Windows | |
| os: windows-latest | |
| python: '3.9' | |
| toxenv: py39-test | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install dependencies | |
| run: python -m pip install --upgrade tox | |
| - name: Execute notebooks as testing | |
| run: tox ${{ matrix.toxargs }} -e ${{ matrix.toxenv }} -- ${{ matrix.toxposargs }} | |
| conda: | |
| name: test conda env file | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| # Don't cancel jobs if one is failing | |
| fail-fast: false | |
| matrix: | |
| os: ["windows-latest", "ubuntu-latest", "macos-latest"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/[email protected] | |
| with: | |
| environment-file: environment.yml | |
| activate-environment: navo-env | |
| auto-activate-base: false | |
| - run: pip install -r doc-requirements.txt | |
| - run: | | |
| python check_env.py | |
| bash -c 'find content -name "*.md" | xargs jupytext --to notebook ' | |
| pytest --nbval content/ | |
| publish: | |
| if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }} | |
| name: Publish HTML | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies | |
| run: python -m pip install --upgrade tox | |
| - name: Execute notebooks as testing | |
| run: tox -e py310-buildhtml | |
| - name: Publish | |
| uses: peaceiris/[email protected] | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./_build/html/ | |
| commit_message: ${{ github.event.head_commit.message }} |