Inflam is a data management system written in Python that manages trial data used in clinical inflammation studies.
Here are some key features of Inflam:
- Provide basic statistical analyses over clinical trial data
- Ability to work on trial data in Comma-Separated Value (CSV) format
- Generate plots of trial data
- Analytical functions and views can be easily extended based on its Model-View-Controller architecture
Inflam requires the following Python packages:
- NumPy - makes use of NumPy's statistical functions
- Matplotlib - uses Matplotlib to generate statistical plots
The following optional packages are required to run Inflam's unit tests:
- pytest - Inflam's unit tests are written using pytest
- pytest-cov - Adds test coverage stats to unit testing
GIT clone the repository and ensure packages listed in requitements.txt are installed
Run inflammation-analysis.py
python inflammation-analysis.py -h
To read one of the patient/inflammation file
python3 inflammation-analysis.py --view record --patient 1 data/inflammation-01.csv
Software Substainability Group
GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007
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