Fix bin index to DoF ID mapping bug in adaptive libMesh meshes (#3206) #10
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| name: CI | |
| on: | |
| # allows us to run workflows manually | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - develop | |
| - master | |
| push: | |
| branches: | |
| - develop | |
| - master | |
| env: | |
| MPI_DIR: /usr | |
| HDF5_ROOT: /usr | |
| OMP_NUM_THREADS: 2 | |
| COVERALLS_PARALLEL: true | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| jobs: | |
| main: | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| python-version: ["3.10"] | |
| mpi: [n, y] | |
| omp: [n, y] | |
| dagmc: [n] | |
| ncrystal: [n] | |
| libmesh: [n] | |
| event: [n] | |
| vectfit: [n] | |
| include: | |
| - python-version: "3.11" | |
| omp: n | |
| mpi: n | |
| - python-version: "3.12" | |
| omp: n | |
| mpi: n | |
| - dagmc: y | |
| python-version: "3.10" | |
| mpi: y | |
| omp: y | |
| - ncrystal: y | |
| python-version: "3.10" | |
| mpi: n | |
| omp: n | |
| - libmesh: y | |
| python-version: "3.10" | |
| mpi: y | |
| omp: y | |
| - libmesh: y | |
| python-version: "3.10" | |
| mpi: n | |
| omp: y | |
| - event: y | |
| python-version: "3.10" | |
| omp: y | |
| mpi: n | |
| - vectfit: y | |
| python-version: "3.10" | |
| omp: n | |
| mpi: y | |
| name: "Python ${{ matrix.python-version }} (omp=${{ matrix.omp }}, | |
| mpi=${{ matrix.mpi }}, dagmc=${{ matrix.dagmc }}, ncrystal=${{ matrix.ncrystal }}, | |
| libmesh=${{ matrix.libmesh }}, event=${{ matrix.event }} | |
| vectfit=${{ matrix.vectfit }})" | |
| env: | |
| MPI: ${{ matrix.mpi }} | |
| PHDF5: ${{ matrix.mpi }} | |
| OMP: ${{ matrix.omp }} | |
| DAGMC: ${{ matrix.dagmc }} | |
| NCRYSTAL: ${{ matrix.ncrystal }} | |
| EVENT: ${{ matrix.event }} | |
| VECTFIT: ${{ matrix.vectfit }} | |
| LIBMESH: ${{ matrix.libmesh }} | |
| NPY_DISABLE_CPU_FEATURES: "AVX512F AVX512_SKX" | |
| OPENBLAS_NUM_THREADS: 1 | |
| # libfabric complains about fork() as a result of using Python multiprocessing. | |
| # We can work around it with RDMAV_FORK_SAFE=1 in libfabric < 1.13 and with | |
| # FI_EFA_FORK_SAFE=1 in more recent versions. | |
| RDMAV_FORK_SAFE: 1 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Environment Variables | |
| run: | | |
| echo "OPENMC_CROSS_SECTIONS=$HOME/nndc_hdf5/cross_sections.xml" >> $GITHUB_ENV | |
| echo "OPENMC_ENDF_DATA=$HOME/endf-b-vii.1" >> $GITHUB_ENV | |
| - name: Apt dependencies | |
| shell: bash | |
| run: | | |
| sudo apt -y update | |
| sudo apt install -y libpng-dev \ | |
| libnetcdf-dev \ | |
| libpnetcdf-dev \ | |
| libhdf5-serial-dev \ | |
| libeigen3-dev | |
| - name: Optional apt dependencies for MPI | |
| shell: bash | |
| if: ${{ matrix.mpi == 'y' }} | |
| run: | | |
| sudo apt install -y libhdf5-mpich-dev \ | |
| libmpich-dev | |
| sudo update-alternatives --set mpi /usr/bin/mpicc.mpich | |
| sudo update-alternatives --set mpirun /usr/bin/mpirun.mpich | |
| sudo update-alternatives --set mpi-x86_64-linux-gnu /usr/include/x86_64-linux-gnu/mpich | |
| - name: Optional apt dependencies for vectfit | |
| shell: bash | |
| if: ${{ matrix.vectfit == 'y' }} | |
| run: sudo apt install -y libblas-dev liblapack-dev | |
| - name: install | |
| shell: bash | |
| run: | | |
| echo "$HOME/NJOY2016/build" >> $GITHUB_PATH | |
| $GITHUB_WORKSPACE/tools/ci/gha-install.sh | |
| - name: display-config | |
| shell: bash | |
| run: | | |
| openmc -v | |
| - name: cache-xs | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/nndc_hdf5 | |
| ~/endf-b-vii.1 | |
| key: ${{ runner.os }}-build-xs-cache | |
| - name: before | |
| shell: bash | |
| run: $GITHUB_WORKSPACE/tools/ci/gha-before-script.sh | |
| - name: test | |
| shell: bash | |
| run: | | |
| CTEST_OUTPUT_ON_FAILURE=1 make test -C $GITHUB_WORKSPACE/build/ | |
| $GITHUB_WORKSPACE/tools/ci/gha-script.sh | |
| - name: after_success | |
| shell: bash | |
| run: | | |
| cpp-coveralls -i src -i include -e src/external --exclude-pattern "/usr/*" --dump cpp_cov.json | |
| coveralls --merge=cpp_cov.json --service=github | |
| finish: | |
| needs: main | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: coverallsapp/github-action@v2 | |
| with: | |
| github-token: ${{ secrets.github_token }} | |
| parallel-finished: true |