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Remove mandatory bias field removal from nesvor #48

Remove mandatory bias field removal from nesvor

Remove mandatory bias field removal from nesvor #48

Workflow file for this run

name: fetal_brain_utils
# on: [push, pull_request]
on:
# trigger on pushes and PRs to main
push:
branches:
- main
pull_request:
branches:
- main
jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Checkout submodules
shell: bash
run: |
auth_header="$(git config --local --get http.https://github.com/.extraheader)"
git submodule sync --recursive
git -c "http.extraheader=$auth_header" -c protocol.version=2 submodule update --init --force --recursive --depth=1
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: 3.9
- name: Install dependencies and build package
run: |
python -m pip install --upgrade pip
python -m pip install -e .
- name: Lint with flake8
run: |
pip install flake8
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=B,C,E,F,W,T4,B9 --show-source --statistics --max-complexity=18 --max-line-length=100 --ignore=E203,E266,E501,W503,F403,F401,C901
- name: Format with black
run: |
pip install black
black *.py -l 100
black fetal_brain_utils/*.py -l 100
black tests/*.py -l 100
- name: Test with pytest
run: |
pip install -U pytest
python -m pytest