changed name of test

LorenFrankLab · Feb 3, 2022 · c25c6aa · c25c6aa
1 parent 4dd6791
commit c25c6aa
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Showing 13 changed files with 39 additions and 12 deletions.
diff --git a/rec_to_binaries/test/e2etests/test_adjust_timestamps.py b/rec_to_binaries/test/e2etests/test_adjust_timestamps.py
@@ -7,7 +7,7 @@
 @pytest.mark.skip(reason='not implemented')
 def test_fix_timestamp_lag_check_if_data_is_written_no_systime(e2etests_directory_path, clear_file_content):
 #     # arrange
-#     file_path = f'{e2etests_directory_path}/test_data/fix_timestamp_lag_check_if_data_is_written_no_systime.dat'
+#     file_path = f'{e2etests_directory_path}/test_data/fix_timestamp_lag_check_if_data_is_written_no_systime.txt'
 #     clear_file_content(file_path)
 #     fake_data = np.array([
 #         ('just', 1),

diff --git a/rec_to_binaries/test/e2etests/test_binary_utils.py b/rec_to_binaries/test/e2etests/test_binary_utils.py
@@ -10,27 +10,27 @@
 )
 
 def test_TrodesBinaryReader_first_line_not_Start_settings_error(e2etests_directory_path):
-    file_path = f'{e2etests_directory_path}/test_data/TrodesBinaryReader_test_first_line_exception.dat'
+    file_path = f'{e2etests_directory_path}/test_data/TrodesBinaryReader_test_first_line_exception.txt'
 
     with pytest.raises(TrodesBinaryFormatError) as ex:
         trodes_binary_reader = TrodesBinaryReader(file_path)
 
 
 def test_TrodesBinaryReader_more_than_1000_length_error(e2etests_directory_path):
-    file_path = f'{e2etests_directory_path}/test_data/TrodesBinaryReader_test_more_than_1000_line_exception.dat'
+    file_path = f'{e2etests_directory_path}/test_data/TrodesBinaryReader_test_more_than_1000_line_exception.txt'
 
     with pytest.raises(TrodesBinaryFormatError):
         trodes_binary_reader = TrodesBinaryReader(file_path)
 
 def test_TrodesBinaryReader_check_if_valid_file_is_read(e2etests_directory_path):
-    file_path = f'{e2etests_directory_path}/test_data/TrodesBinaryReader_check_if_valid_file_is_read.dat'
+    file_path = f'{e2etests_directory_path}/test_data/TrodesBinaryReader_check_if_valid_file_is_read.txt'
     trodes_binary_reader = TrodesBinaryReader(file_path)
 
-    assert trodes_binary_reader.data_start_byte == 43
+    assert trodes_binary_reader.txta_start_byte == 43
     assert trodes_binary_reader.header_params == {'a': '1', 'data': '2'}
 
 def test_TrodesLFPBinaryLoader_check_if_file_can_be_read(e2etests_directory_path):
-    file_path = f'{e2etests_directory_path}/test_data/TrodesLFPBinaryLoader_test_file_read.dat'
+    file_path = f'{e2etests_directory_path}/test_data/TrodesLFPBinaryLoader_test_file_read.txt'
     trodes_LFP_binary_loader = TrodesLFPBinaryLoader(file_path)
 
     assert trodes_LFP_binary_loader.header_params['Original_file'] == 'test_Original_file'
@@ -45,7 +45,7 @@ def test_TrodesLFPBinaryLoader_check_if_file_can_be_read(e2etests_directory_path
     assert trodes_LFP_binary_loader.header_params['Fields'] == 'test_Fields'
 
 def test_TrodesTimestampBinaryLoader_check_if_file_can_be_read(e2etests_directory_path):
-    file_path = f'{e2etests_directory_path}/test_data/TrodesTimestampBinaryLoader_test_file_read.dat'
+    file_path = f'{e2etests_directory_path}/test_data/TrodesTimestampBinaryLoader_test_file_read.txt'
     trodes_timestamp_binary_loader = TrodesTimestampBinaryLoader(file_path)
 
     assert trodes_timestamp_binary_loader.header_params['Byte_order'] == 'test_Byte_order'
@@ -56,7 +56,7 @@ def test_TrodesTimestampBinaryLoader_check_if_file_can_be_read(e2etests_director
     assert trodes_timestamp_binary_loader.header_params['Fields'] == 'test_Fields'
 
 def test_TrodesSpikeBinaryLoader_check_if_data_file_is_read(e2etests_directory_path):
-    file_path = f'{e2etests_directory_path}/test_data/TrodesSpikeBinaryLoader_test_file_read.dat'
+    file_path = f'{e2etests_directory_path}/test_data/TrodesSpikeBinaryLoader_test_file_read.txt'
     trodes_spike_binary_loader = TrodesSpikeBinaryLoader(file_path)
 
 
@@ -79,7 +79,7 @@ def test_TrodesSpikeBinaryLoader_check_if_data_file_is_read(e2etests_directory_p
 
 @pytest.mark.skip(reason="I have to figure out why pos_list stays empty")
 def test_TrodesPosBinaryLoader_check_if_data_file_is_read(e2etests_directory_path):
-    file_path = f'{e2etests_directory_path}/test_data/TrodesPosBinaryLoader_check_if_data_file_is_read.dat'
+    file_path = f'{e2etests_directory_path}/test_data/TrodesPosBinaryLoader_check_if_data_file_is_read.txt'
     trodes_pos_binary_loader = TrodesPosBinaryLoader(file_path)
 
     breakpoint()
@@ -93,7 +93,7 @@ def test_TrodesPosBinaryLoader_check_if_data_file_is_read(e2etests_directory_pat
 
 @pytest.mark.skip(reason="I have to figure out why pos_list stays empty")
 def test_TrodesDIOBinaryLoader_check_if_data_file_is_read(e2etests_directory_path):
-    file_path = f'{e2etests_directory_path}/test_data/TrodesPosBinaryLoader_check_if_data_file_is_read.dat'
+    file_path = f'{e2etests_directory_path}/test_data/TrodesPosBinaryLoader_check_if_data_file_is_read.txt'
     trodes_pos_binary_loader = TrodesDIOBinaryLoader(file_path)
 
     assert True
diff --git a/...aryReader_check_if_valid_file_is_read.dat → ...aryReader_check_if_valid_file_is_read.txt b/...aryReader_check_if_valid_file_is_read.dat → ...aryReader_check_if_valid_file_is_read.txt
diff --git a/...inaryReader_test_first_line_exception.dat → ...inaryReader_test_first_line_exception.txt b/...inaryReader_test_first_line_exception.dat → ...inaryReader_test_first_line_exception.txt
diff --git a/...er_test_more_than_1000_line_exception.dat → ...er_test_more_than_1000_line_exception.txt b/...er_test_more_than_1000_line_exception.dat → ...er_test_more_than_1000_line_exception.txt
diff --git a/.../TrodesLFPBinaryLoader_test_file_read.dat → .../TrodesLFPBinaryLoader_test_file_read.txt b/.../TrodesLFPBinaryLoader_test_file_read.dat → .../TrodesLFPBinaryLoader_test_file_read.txt
diff --git a/rec_to_binaries/test/e2etests/test_data/TrodesPosBinaryLoader_check_if_data_file_is_read.txt b/rec_to_binaries/test/e2etests/test_data/TrodesPosBinaryLoader_check_if_data_file_is_read.txt
@@ -0,0 +1,8 @@
+<Start settings>
+a:1
+data:2
+threshold:test_threshold
+dark:test_dark
+clockrate:test_clockrate
+field_str:test_Fields
+<End settings>
diff --git a/rec_to_binaries/test/e2etests/test_data/TrodesSpikeBinaryLoader_test_file_read.txt b/rec_to_binaries/test/e2etests/test_data/TrodesSpikeBinaryLoader_test_file_read.txt
@@ -0,0 +1,19 @@
+<Start settings>
+a:1
+data:2
+Original_file:test_Original_file
+nTrode_ID:1
+num_channels:10
+Clock rate:3
+Voltage_scaling:v
+Time_offset:4
+Threshold:5
+Spike_invert:t
+Reference:6
+ReferenceNTrode:7
+ReferenceChannel:8
+Filter:t
+lowPassFilter:y
+highPassFilter:n
+Fields:test_field
+<End settings>
diff --git a/...sTimestampBinaryLoader_test_file_read.dat → ...sTimestampBinaryLoader_test_file_read.txt b/...sTimestampBinaryLoader_test_file_read.dat → ...sTimestampBinaryLoader_test_file_read.txt
diff --git a/...g_check_if_data_is_written_no_systime.dat → ...g_check_if_data_is_written_no_systime.txt b/...g_check_if_data_is_written_no_systime.dat → ...g_check_if_data_is_written_no_systime.txt
diff --git a/...odesExtractDataFile_not_start_setting.dat → ...odesExtractDataFile_not_start_setting.txt b/...odesExtractDataFile_not_start_setting.dat → ...odesExtractDataFile_not_start_setting.txt
diff --git a/...aFile_check_file_is_written_correctly.dat → ...aFile_check_file_is_written_correctly.txt b/...aFile_check_file_is_written_correctly.dat → ...aFile_check_file_is_written_correctly.txt
diff --git a/rec_to_binaries/test/e2etests/test_read_binaries.py b/rec_to_binaries/test/e2etests/test_read_binaries.py
@@ -29,13 +29,13 @@ def test_write_trodes_extracted_datafile(e2etests_directory_path, clear_file_con
     assert file_lines[3] == '\x04\x00\x00\x00\x00\x00\x00\x00\x05\x00\x00\x00\x00\x00\x00\x00\x06\x00\x00\x00\x00\x00\x00\x00'
 
 def test_readTrodesExtractedDataFile_check_first_line_for_Start_settings(e2etests_directory_path):
-    file_path = f'{e2etests_directory_path}/test_data/readTrodesExtractDataFile_not_start_setting.dat'
+    file_path = f'{e2etests_directory_path}/test_data/readTrodesExtractDataFile_not_start_setting.txt'
 
     with pytest.raises(Exception):
         readTrodesExtractedDataFile(file_path)
 
 def test_readTrodesExtractedDataFile_check_file_is_written_correctly(e2etests_directory_path):
-    file_path = f'{e2etests_directory_path}/test_data/readTrodesExtractedDataFile_check_file_is_written_correctly.dat'
+    file_path = f'{e2etests_directory_path}/test_data/readTrodesExtractedDataFile_check_file_is_written_correctly.txt'
     fields_text = readTrodesExtractedDataFile(file_path)
 
     assert fields_text['a'] == '[1,2,3]'