update with project overview and statement

_config.yml

@@ -79,8 +79,7 @@ defaults:
     values:
       layout: people
       subpath: '/assets/images/'
-  -
-    scope:
+  - scope:
       path: ""
       type: "pages"
     values:

_people/albert.md

@@ -1,7 +1,7 @@
 ---
 name: Albert Hsiao MD, PhD
 role: Mentor
-email: a3hsiao@health.ucsd.edu
+email: a3hsiao[at]health[dot]ucsd[dot]edu
 photo: ../assets/images/albert1.png
 website: https://profiles.ucsd.edu/albert.hsiao
 ---

_people/luke.md

@@ -1,7 +1,7 @@
 ---
 name: Luke Taylor
 role: Student
-email: lwtaylor@ucsd.edu
+email: lwtaylor[at]ucsd[dot]edu
 photo: ../assets/images/luke.png
-website: https://www.linkedin.com/in/muchan-li-989703227/
+website: https://www.linkedin.com/in/luke-taylor-86a4a6207/
 ---

_people/muchan.md

@@ -1,7 +1,7 @@
 ---
 name: Muchan Li
 role: Student
-email: mul005@ucsd.edu
+email: mul005[at]ucsd[dot]edu
 photo: ../assets/images/muchan.jpg
 website: https://www.linkedin.com/in/muchan-li-989703227/
 ---

_people/raymond.md

@@ -1,7 +1,7 @@
 ---
 name: Raymond Song
 role: Student
-email: rysong@ucsd.edu
+email: rysong[at]ucsd[dot]edu
 photo: ../assets/images/raymond.png
 website: https://raymondysong.com/
 ---

_site/assets/search.json

@@ -9,16 +9,16 @@
 
 
   {
-    "title": "LLaVA X-Ray Vision",
-    "excerpt": "Alembic is a starting point for Jekyll projects. Rather than starting from scratch, this boilerplate is designed to get the ball rolling immediately. Install it, configure it, tweak it, push it.\n",
-    "content": "This is a a Data Science Capstone Project investigated and put together by Luke Taylor, Muchan Li, and Raymond Song under the mentorship of Albert Hsiao, MD, PhD. All are affiliated with the Halicioglu Data Science Institute at UC San Diego. Professor Hsiao is additionally affiliated with UC San Diego Health and Radiology Department.\n\nInstallation\n\nQuick setup\n\nTo give you a running start I’ve put together some starter kits that you can download, fork or even deploy immediately:\n\n\n  ⚗️🍨 Vanilla Jekyll starter kit\n\n  ⚗️🌲 Forestry starter kit\n\n\n  \n    ⚗️💠 Netlify CMS starter kit\n\n  \n  \n    ⚗️:octocat: GitHub Pages with remote theme kit\nDownload kit\n  \n  ⚗️🚀 Stackbit starter kit\n\n\n\nAs a Jekyll theme\n\n\n  Add gem \"alembic-jekyll-theme\" to your Gemfile to add the theme as a dependancy\n  Run the command bundle install in the root of project to install the theme and its dependancies\n  Add theme: alembic-jekyll-theme to your _config.yml file to set the site theme\n  Run bundle exec jekyll serve to build and serve your site\n  Done! Use the configuration documentation and the example _config.yml file to set things like the navigation, contact form and social sharing buttons\n\n\nAs a GitHub Pages remote theme\n\n\n  Add gem \"jekyll-remote-theme\" to your Gemfile to add the theme as a dependancy\n  Run the command bundle install in the root of project to install the jekyll remote theme gem as a dependancy\n  Add jekyll-remote-theme to the list of plugins in your _config.yml file\n  Add remote_theme: daviddarnes/alembic@main to your _config.yml file to set the site theme\n  Run bundle exec jekyll serve to build and serve your site\n  Done! Use the configuration documentation and the example _config.yml file to set things like the navigation, contact form and social sharing buttons\n\n\nAs a Boilerplate / Fork\n\n(deprecated, not recommended)\n\n\n  Fork the repo\n  Replace the Gemfile with one stating all the gems used in your project\n  Delete the following unnecessary files/folders: .github, LICENSE, screenshot.png, CNAME and alembic-jekyll-theme.gemspec\n  Run the command bundle install in the root of project to install the jekyll remote theme gem as a dependancy\n  Run bundle exec jekyll serve to build and serve your site\n  Done! Use the configuration documentation and the example _config.yml file to set things like the navigation, contact form and social sharing buttons\n\n\nCustomising\n\nWhen using Alembic as a theme means you can take advantage of the file overriding method. This allows you to overwrite any file in this theme with your own custom file, by matching the file name and path. The most common example of this would be if you want to add your own styles or change the core style settings.\n\nTo add your own styles copy the styles.scss into your own project with the same file path (assets/styles.scss). From there you can add your own styles, you can even optionally ignore the theme styles by removing the @import \"alembic\"; line.\n\nIf you’re looking to set your own colours and fonts you can overwrite them by matching the variable names from the _settings.scss file in your own styles.scss, make sure to state them before the @import \"alembic\"; line so they take effect. The settings are a mixture of custom variables and settings from Sassline - follow the link to find out how to configure the typographic settings.\n",
+    "title": "AI-powered X-Ray Interpreter",
+    "excerpt": "An exploration and navigation of using state-of-the-art Deep Learning and Large Language models to interpret X-Ray images and generate reports.\n",
+    "content": "Overview\n\nThis is a a Data Science Capstone Project investigated and put together by Luke Taylor, Muchan Li, and Raymond Song under the mentorship of Albert Hsiao, MD, PhD. All are affiliated with the Halicioglu Data Science Institute at UC San Diego. Professor Hsiao is additionally affiliated with UC San Diego Health and Radiology Department.\n\n\n  Codebase  github\n\n\n  Report 📝\n\n  Poster 🪧\n\n  Team Info 👨‍💻\n\n\n\nProblem Statement and Motivation\n\nDeep learning models like convolutional neurla networks (CNNs) have demonstrated promising ways of application in automating radiograph analysis, detecting conditions such as pulmonary edema, pneumothorax, and so forth. However, vast amount of data other than the radiographs has been left out, such radiologist reports, in the modeling process and can potentially make automation and predicition more accurate and usable. Inspired by advancements in Large Language Models (LLMs) and Vision Transformers (ViTs), we’re exploring multi-modal models that integrate text and image data for improved results.\n\nQuick setup\n\nTo give you a running start I’ve put together some starter kits that you can download, fork or even deploy immediately:\n\n\n  \n    ⚗️🍨 Vanilla Jekyll starter kit\n  \n  ⚗️🌲 Forestry starter kit\n\n\n  \n    ⚗️💠 Netlify CMS starter kit\n\n  \n  \n    ⚗️:octocat: GitHub Pages with remote theme kit\nDownload kit\n  \n  ⚗️🚀 Stackbit starter kit\n\n\n\nAs a Jekyll theme\n\n\n  Add gem \"alembic-jekyll-theme\" to your Gemfile to add the theme as a dependancy\n  Run the command bundle install in the root of project to install the theme and its dependancies\n  Add theme: alembic-jekyll-theme to your _config.yml file to set the site theme\n  Run bundle exec jekyll serve to build and serve your site\n  Done! Use the configuration documentation and the example _config.yml file to set things like the navigation, contact form and social sharing buttons\n\n\nAs a GitHub Pages remote theme\n\n\n  Add gem \"jekyll-remote-theme\" to your Gemfile to add the theme as a dependancy\n  Run the command bundle install in the root of project to install the jekyll remote theme gem as a dependancy\n  Add jekyll-remote-theme to the list of plugins in your _config.yml file\n  Add remote_theme: daviddarnes/alembic@main to your _config.yml file to set the site theme\n  Run bundle exec jekyll serve to build and serve your site\n  Done! Use the configuration documentation and the example _config.yml file to set things like the navigation, contact form and social sharing buttons\n\n\nAs a Boilerplate / Fork\n\n(deprecated, not recommended)\n\n\n  Fork the repo\n  Replace the Gemfile with one stating all the gems used in your project\n  Delete the following unnecessary files/folders: .github, LICENSE, screenshot.png, CNAME and alembic-jekyll-theme.gemspec\n  Run the command bundle install in the root of project to install the jekyll remote theme gem as a dependancy\n  Run bundle exec jekyll serve to build and serve your site\n  Done! Use the configuration documentation and the example _config.yml file to set things like the navigation, contact form and social sharing buttons\n\n\nCustomising\n\nWhen using Alembic as a theme means you can take advantage of the file overriding method. This allows you to overwrite any file in this theme with your own custom file, by matching the file name and path. The most common example of this would be if you want to add your own styles or change the core style settings.\n\nTo add your own styles copy the styles.scss into your own project with the same file path (assets/styles.scss). From there you can add your own styles, you can even optionally ignore the theme styles by removing the @import \"alembic\"; line.\n\nIf you’re looking to set your own colours and fonts you can overwrite them by matching the variable names from the _settings.scss file in your own styles.scss, make sure to state them before the @import \"alembic\"; line so they take effect. The settings are a mixture of custom variables and settings from Sassline - follow the link to find out how to configure the typographic settings.\n",
     "url": "/"
   },
 
   {
     "title": "About Us",
     "excerpt": "\n",
-    "content": "\nMentor\n\n\n    \n    \n    \n    \n        \n        \n        Albert Hsiao MD, PhD\n        \n        \n        \n        \n        Email contact: [email protected]\n        \n\n        Albert Hsiao, MD, PhD is a cardiothoracic radiologist trained in engineering at Caltech and bioengineering and bioinformatics in the UC San Diego Medical Scientist Training Program (MSTP). He completed his residency and fellowships in Interventional Radiology and Cardiovascular Imaging at Stanford before returning to UC San Diego as faculty in Radiology, where he leads advanced cardiovascular imaging and the Augmented Imaging and Data Analytics (AiDA) research laboratory. He also serves as co-director of the T32 clinician-scientist radiology research residency program and co-director of the MSTP SURF program. While a radiology resident himself at Stanford, he co-founded Arterys, a cloud-native software company to bring 4D Flow MRI and artificial intelligence technologies to market. He continues to partner with industry to develop and bring new imaging technologies to market to improve diagnosis and management of disease.\n\n    \n\n\nStudents\n\n\n    \n    \n    \n    \n    \n    \n        \n        \n        Luke Taylor\n        \n        \n        \n        \n        Email contact: [email protected]\n        \n\n        \n\n    \n\n\n    \n    \n    \n    \n    \n    \n        \n        \n        Muchan Li\n        \n        \n        \n        \n        Email contact: [email protected]\n        \n\n        Muchan Li is a senior Data Science student at UC San Diego that’s vastly interested in data, security & privacy, and HCI. Upon graduation, he plans on continuing his academic career by pursuing a PhD and further investigating issues and solutions with respect to smart homes, smart home health, and usable security and privacy.\n\n    \n\n\n    \n    \n    \n    \n    \n    \n        \n        \n        Raymond Song\n        \n        \n        \n        \n        Email contact: [email protected]\n        \n\n        \n\n    \n\n\n    \n\n",
+    "content": "\nMentor\n\n\n    \n    \n    \n    \n        \n        \n        Albert Hsiao MD, PhD\n        \n        \n        \n        \n        Email contact: a3hsiao[at]health[dot]ucsd[dot]edu\n        \n\n        Albert Hsiao, MD, PhD is a cardiothoracic radiologist trained in engineering at Caltech and bioengineering and bioinformatics in the UC San Diego Medical Scientist Training Program (MSTP). He completed his residency and fellowships in Interventional Radiology and Cardiovascular Imaging at Stanford before returning to UC San Diego as faculty in Radiology, where he leads advanced cardiovascular imaging and the Augmented Imaging and Data Analytics (AiDA) research laboratory. He also serves as co-director of the T32 clinician-scientist radiology research residency program and co-director of the MSTP SURF program. While a radiology resident himself at Stanford, he co-founded Arterys, a cloud-native software company to bring 4D Flow MRI and artificial intelligence technologies to market. He continues to partner with industry to develop and bring new imaging technologies to market to improve diagnosis and management of disease.\n\n    \n\n\nStudents\n\n\n    \n    \n    \n    \n    \n    \n        \n        \n        Luke Taylor\n        \n        \n        \n        \n        Email contact: lwtaylor[at]ucsd[dot]edu\n        \n\n        \n\n    \n\n\n    \n    \n    \n    \n    \n    \n        \n        \n        Muchan Li\n        \n        \n        \n        \n        Email contact: mul005[at]ucsd[dot]edu\n        \n\n        Muchan Li is a senior Data Science student at UC San Diego that’s vastly interested in data, security & privacy, and HCI. Upon graduation, he plans on continuing his academic career by pursuing a PhD and further investigating issues and solutions with respect to smart homes, smart home health, and usable security and privacy.\n\n    \n\n\n    \n    \n    \n    \n    \n    \n        \n        \n        Raymond Song\n        \n        \n        \n        \n        Email contact: rysong[at]ucsd[dot]edu\n        \n\n        \n\n    \n\n\n    \n\n",
     "url": "/people/"
   }
 

_site/feed.xml

@@ -1 +1 @@
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+<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" xml:lang="en-GB"><generator uri="https://jekyllrb.com/" version="4.3.3">Jekyll</generator><link href="http://localhost:4000/feed.xml" rel="self" type="application/atom+xml" /><link href="http://localhost:4000/" rel="alternate" type="text/html" hreflang="en-GB" /><updated>2024-03-04T05:29:43+00:00</updated><id>http://localhost:4000/feed.xml</id><title type="html">Alembic</title><subtitle>Alembic is a starting point for Jekyll projects. Rather than starting from scratch, this boilerplate is designed to get the ball rolling immediately</subtitle><author><name>DavidDarnes</name></author></feed>