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1. seir seir Public

   SEIR models with odin, dust and mcstate

   C++ 3

2. covid_multi_strain covid_multi_strain Public

   Code for 'Impact of vaccinations, boosters and lockdowns on COVID-19 waves in French Polynesia'

   R 2 2

3. covid_remaining_burden covid_remaining_burden Public

   Code for 'Unexposed populations and potential COVID-19 hospitalisations and deaths in European countries as per data up to 21st November 2021'

   R 3

4. COVID_homeless_modelling COVID_homeless_modelling Public

   Code for 'Comparison of infection control strategies to reduce COVID-19 outbreaks in homeless shelters in the United States: a simulation study'

   R

5. VLSpatiotemporalModelling VLSpatiotemporalModelling Public

   Code for 'Inferring transmission trees to guide targeting of interventions against visceral leishmaniasis and post–kala-azar dermal leishmaniasis'

   MATLAB 4 1

6. QuantifyingVLnaturalHistory QuantifyingVLnaturalHistory Public

   R code for fitting multi-state Markov model and producing figures in 'Quantification of the natural history of visceral leishmaniasis and consequences for control'

   R 1