lphy.base.GeneratorValidationTest ‑ validateFunctions
lphy.base.GeneratorValidationTest ‑ validateGenerativeDistributions
lphy.base.LPhyExamplesTest ‑ testCodeBuilder
lphy.base.LPhyExamplesTest ‑ testLPhyExamplesRun
lphy.base.ResampleTest ‑ testDataModel
lphy.base.ResampleTest ‑ testResample
lphy.base.SLPhyTest ‑ testMacro
lphy.base.distribution.BetaTest ‑ logDensity(Value, Value, double[])[1]
lphy.base.distribution.BetaTest ‑ logDensity(Value, Value, double[])[2]
lphy.base.distribution.BetaTest ‑ sample(Value, Value)[1]
lphy.base.distribution.BetaTest ‑ sample(Value, Value)[2]
lphy.base.distribution.DirichletMultinomialTest ‑ testDirichletMultinomial
lphy.base.distribution.MultinomialTest ‑ testMultinomial
lphy.base.evolution.alignment.CharSetBlockTest ‑ testParseCharSet
lphy.base.evolution.branchrate.LocalClockTest ‑ apply
lphy.base.evolution.branchrate.LocalClockTest ‑ applyExcludeStem
lphy.base.evolution.branchrate.LocalClockTest ‑ setRate
lphy.base.evolution.coalescent.StructuredCoalescentTest ‑ testPopulateRateMatrix
lphy.base.evolution.coalescent.StructuredCoalescentTest ‑ testSelectRandomEvent
lphy.base.evolution.coalescent.StructuredCoalescentTest ‑ testSortDemes
lphy.base.evolution.coalescent.populationmodel.ExponentialPopulationTest ‑ testGetThetaWithNA
lphy.base.evolution.coalescent.populationmodel.ExponentialPopulationTest ‑ testGetThetaWithoutNA
lphy.base.evolution.coalescent.populationmodel.ExponentialPopulationTest ‑ testIntensityAndInverseIntensityWithNA
lphy.base.evolution.coalescent.populationmodel.ExponentialPopulationTest ‑ testIntensityAndInverseIntensityWithoutNA
lphy.base.evolution.coalescent.populationmodel.ExponentialPopulationTest ‑ testInverseIntensityMultipleWithNA
lphy.base.evolution.coalescent.populationmodel.GompertzPopulationT50Test ‑ testGetIntensity
lphy.base.evolution.coalescent.populationmodel.GompertzPopulationT50Test ‑ testGetInverseIntensity
lphy.base.evolution.coalescent.populationmodel.GompertzPopulationT50Test ‑ testGetTheta
lphy.base.evolution.coalescent.populationmodel.GompertzPopulationT50Test ‑ testGetThetaAtT50
lphy.base.evolution.coalescent.populationmodel.GompertzPopulationT50Test ‑ testInverseIntensity
lphy.base.evolution.coalescent.populationmodel.LogisticPopulationTest ‑ testIntensityAndInverseIntensityWithNA
lphy.base.evolution.coalescent.populationmodel.LogisticPopulationTest ‑ testIntensityAndInverseIntensityWithoutNA
lphy.base.evolution.coalescent.populationmodel.LogisticPopulationTest ‑ testThetaWithNA
lphy.base.evolution.coalescent.populationmodel.LogisticPopulationTest ‑ testThetaWithoutNA
lphy.base.evolution.coalescent.populationmodel.LogisticPopulationTest ‑ testToStringWithNA
lphy.base.evolution.coalescent.populationmodel.LogisticPopulationTest ‑ testToStringWithoutNA
lphy.base.evolution.continuous.PhyloMultivariateBrownianTest ‑ mvnMultipleTraitValuesContrastsTest
lphy.base.evolution.continuous.PhyloMultivariateBrownianTest ‑ mvnMultipleTraitValuesStdErrTest
lphy.base.evolution.substitutionmodel.BinaryCovarionTest ‑ testQAndFreqs
lphy.base.evolution.substitutionmodel.BinaryCovarionTest ‑ testQAndFreqs2
lphy.base.evolution.substitutionmodel.BinaryCovarionTest ‑ testTransProbWithEqualHFreqs
lphy.base.evolution.substitutionmodel.BinaryCovarionTest ‑ testTransProbWithUnEqualHFreqs
lphy.base.evolution.substitutionmodel.GTRTest ‑ testGTR(Double[], Double[], double[][])[1]
lphy.base.evolution.substitutionmodel.GTRTest ‑ testGTR(Double[], Double[], double[][])[2]
lphy.base.evolution.substitutionmodel.GTRTest ‑ testGTR(Double[], Double[], double[][])[3]
lphy.base.evolution.tree.CalibratedYuleTest ‑ coalesceTest
lphy.base.evolution.tree.CalibratedYuleTest ‑ randomNodeTest
lphy.base.evolution.tree.CalibratedYuleTest ‑ test1
lphy.base.evolution.tree.CalibratedYuleTest ‑ test2
lphy.base.evolution.tree.CalibratedYuleTest ‑ test3
lphy.base.evolution.tree.LabelCladeTest ‑ applyTest1
lphy.base.evolution.tree.LabelCladeTest ‑ applyTest2
lphy.base.evolution.tree.MRCATest ‑ applyTest1
lphy.base.evolution.tree.MRCATest ‑ applyTest2
lphy.base.evolution.tree.MRCATest ‑ applyTest3
lphy.base.evolution.tree.MRCATest ‑ applyTest4
lphy.base.evolution.tree.SampleBranchTest ‑ sample
lphy.base.evolution.tree.SubsampledTreeTest ‑ SubsampledTree
lphy.base.evolution.tree.SubsampledTreeTest ‑ averageBranchRate
lphy.base.evolution.tree.SubsampledTreeTest ‑ getLeafList
lphy.base.evolution.tree.SubsampledTreeTest ‑ getSampleResult
lphy.base.evolution.tree.SubsampledTreeTest ‑ getSampledTree
lphy.base.evolution.tree.SubstituteCladeTest ‑ applyTest
lphy.base.evolution.tree.SubstituteCladeTest ‑ timeTest
lphy.base.evolution.tree.TimeTreeTest ‑ getBranchRatesTest
lphy.base.evolution.tree.TimeTreeTest ‑ getInternalNodes
lphy.base.evolution.tree.TimeTreeTest ‑ getNodes
lphy.base.evolution.tree.TimeTreeTest ‑ getOldestNode
lphy.base.function.DifferenceTest ‑ DifferenceDouble
lphy.base.function.DifferenceTest ‑ DifferenceInteger
lphy.base.function.DifferenceTest ‑ DifferenceString
lphy.base.function.DifferenceTest ‑ SecondSetHasOtherElements
lphy.base.function.DifferenceTest ‑ sameSet
lphy.base.function.UnionTest ‑ applyTest1
lphy.base.function.UnionTest ‑ applyTest2
lphy.base.function.io.GuessSeqTypeFastaTest ‑ readAminoAcid
lphy.base.function.io.GuessSeqTypeFastaTest ‑ readNucleotide
lphy.base.function.tree.NewickTest ‑ parseNewick
lphy.core.parser.ElementWise2ArgsTest ‑ test1DAndOr1D
lphy.core.parser.ElementWise2ArgsTest ‑ test1DPlus2D
lphy.core.parser.ElementWise2ArgsTest ‑ test2DTimes2D
lphy.core.parser.ParserDictTest ‑ testData
lphy.core.parser.ParserDictTest ‑ testModel
lphy.core.parser.ParserTest ‑ testAssignment
lphy.core.parser.ParserTest ‑ testSemicolon
lphy.core.parser.function.ExpressionNode1ArgTest ‑ testIdNull
lphy.core.parser.function.ExpressionNode1ArgTest ‑ testProbit
lphy.core.parser.function.ExpressionNode1ArgTest ‑ testRound
lphystudio.app.graphicalmodelpanel.StudioConsoleInterpreterTest ‑ interpretInput
lphystudio.core.codecolorizer.LineCodeColorizerTest ‑ parse