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1. kipoi/kipoiseq kipoi/kipoiseq Public

   Standard set of data-loaders for training and making predictions for DNA sequence-based models.

   Python 79 13

2. kipoi/kipoi kipoi/kipoi Public

   Kipoi's model zoo API

   Jupyter Notebook 236 41

3. gnomAD_DB gnomAD_DB Public

   This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.

   Python 38 10

4. uzh/ezRun uzh/ezRun Public

   An R meta-package for the analysis of Next Generation Sequencing data

   R 23 8

5. ratschlab/aestetik ratschlab/aestetik Public

   AESTETIK: AutoEncoder for Spatial Transcriptomics Expression with Topology and Image Knowledge

   Python 11

6. ratschlab/simulate_spatial_transcriptomics_tool ratschlab/simulate_spatial_transcriptomics_tool Public

   Simulate spatial transcriptomics data

   Jupyter Notebook 2