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Bilayer upgrade #9

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Bilayer upgrade #9

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Pascal2000
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Made some major refactoring and stability improvements for AugmentA bilayer branch to make it ready for the merge into main.
Also updated dependencies to use more maintained ones.
Tested with given example mesh, electroanatomical mapping, volumetric, and biatrial MRI mesh (Code coverage of 65%).

Pascal Maierhofer added 30 commits November 25, 2024 15:44
… vtk files. Present in all AugmentA branches
Pascal Maierhofer added 26 commits November 27, 2024 18:55
… ids created on the endo part to the volumetric mesh and some minor bug fixes with filenames
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