dev updates Thu 17 Sep 2015 06:57:39 BST trimmomatic lie 412 to 420

KHP-Informatics · Sep 17, 2015 · 0ec2a93 · 0ec2a93
2 parents 81a2a61 + 58667cd
commit 0ec2a93
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/bin/ngseasy_trimmomatic b/bin/ngseasy_trimmomatic
@@ -409,9 +409,9 @@ fi
 ########################################################################################################
 # adapter_fa : check of this is in palce and exit if not
 ########################################################################################################
-if [[ ${GENOMEBUILD} == "b37" ]]; then
+if [[ "${GENOMEBUILD}" == "b37" ]]; then
     adapter_fa="/home/pipeman/ngs_projects/ngseasy_resources/reference_genomes_b37/contaminant_list.fa"
-elif [[ ${GENOMEBUILD} == "hg19" ]]; then
+elif [[ "${GENOMEBUILD}" == "hg19" ]]; then
     adapter_fa="/home/pipeman/ngs_projects/ngseasy_resources/reference_genomes_hg19/contaminant_list.fa"
 elif [[ "${GENOMEBUILD}" == "hs37d5" ]]; then
     adapter_fa="/home/pipeman/ngs_projects/ngseasy_resources/reference_genomes_hs37d5/contaminant_list.fa"

diff --git a/containerized/ngseasy_dockerfiles/.DS_Store b/containerized/ngseasy_dockerfiles/.DS_Store