Stemmatology, v0.3.2

New minor version, with elimination of non ascii characters in comments, to meet CRAN requirements and ensure compatibility with older versions of R.

First CRAN release

First release to be published on CRAN. Lots of updates,

• Switched to igraph for network and stemma plotting ;
• enhanced visualisations:
  • stemmata plotted as tree
  • dotted lines for uncertainty;
  • created special layout where height in the stemma is proportional to the number of variants from the model;
  • added color, titles, etc.
• profiled the PCC.Stemma functions to gain efficiency (exec time /2);
• simplified PCC.Stemma outputs and documented it;
• added tests for all functions;
• rewrote code of some PCC.Exploratory functions to make them more efficient;
• various corrections and improvements;
• bug fixes.

See #43, #33 , #32.

v0.2.3 ``Namur''

Minor release, with many improvements:

• added tests for the PCC.Stemma functions;
• rewrote part of the code, to make it less verbose and more efficient;
• corrected some minor bugs;
• improved documentation;
• added ask=TRUE and verbose=FALSE to the PCC.Stemma functions.
• Switched to igraph for stemma plotting ;
• enhanced visualisations:
  • stemmata plotted as tree
  • dotted lines for uncertainty;
  • created special layout where height in the stemma is proportional to the number of variants from the model;
  • added color, titles, etc.
• profiled the PCC.Stemma functions to gain efficiency (exec time /2);
• simplified PCC.Stemma outputs and documented it.

v0.2.2 Zenodo release

New release of the package, for archiving on Zenodo.

v0.2.2pre-alpha

First release of the package, with the code mostly in the state of 2014, and with documentation added.