Update CreateCBCTSegmentations.py #16

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

	name: Python application

	on:
	push:
	branches: [ "main" ]
	pull_request:
	branches: [ "main" ]

	permissions:
	contents: read

	jobs:
	build:

	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python 3.10
	uses: actions/setup-python@v3
	with:
	python-version: "3.10"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install pytest
	pip install pytest-cov
	pip install coverage
	if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
	- name: install elastix
	run: \|
	wget -P ~/ElastixDownload "https://github.com/SuperElastix/elastix/releases/download/5.0.1/elastix-5.0.1-linux.tar.bz2"
	- name: Test with pytest
	run: \|
	mkdir /home/runner/elastix
	tar -xvjf /home/runner/ElastixDownload/elastix-5.0.1-linux.tar.bz2 -C /home/runner/elastix
	PATH=$PATH:~/elastix/elastix-5.0.1-linux/bin
	LD_LIBRARY_PATH=$LD_LIBRARY_PATH:~/elastix/elastix-5.0.1-linux/lib
	echo "$PATH"
	echo "$LD_LIBRARY_PATH"
	pytest --cov=CBCTCardiacSegmentation/ --cov-report=xml
	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3

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