updated

smoothing notebook
IlyaLab · Sep 25, 2024 · ec1c943 · ec1c943
1 parent 136fac0
commit ec1c943
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Showing 2 changed files with 492 additions and 978 deletions.
diff --git a/gssnng/score_cells.py b/gssnng/score_cells.py
@@ -213,7 +213,7 @@ def _build_data_list(
         # then for each group
         qi = adata[adata.obs['gssnng_groupby'] == ci]
         if recompute_neighbors > 0:
-            print("RECOMPUTING KNN")
+            print("RECOMPUTING KNN for " + ci)
             sc.pp.neighbors(qi, n_neighbors=recompute_neighbors)
         # smooth and make an adata, and add to the list
         qi_smoothed = _smooth_out(qi, samp_neighbors, smooth_mode)