hybridLFPy-0.2rc2

hybridLFPy-0.2rc2

Feature/bugfix release candidate which:

• adds support for Python 3 (3.7>=)
• unsupports Python 2
• supports LFPy-2.2
• examples using NEST-3.0
• automates certain actions on GitHub.com

The following changes since https://github.com/INM-6/hybridLFPy/releases/tag/v0.1.3
d127f01 (HEAD -> master, tag: v0.2rc2, origin/master, origin/HEAD) hope PyPI.org may parse MD properly (#63)
534fa96 (tag: v0.2rc1) add numpy and Cython to python-publish action (#62)
76a8d98 (tag: v0.2rc0) Fix Dockerfiles (#61)
c341852 bump version number to v0.2rc0 (#59)
bd8bb9c Add Dockerfile info to README etc. (#58)
eba6e49 Removed Lintly badge
5f32a75 run flake8 checks before pytest (#55)
ee19dad fix stale file (#54)
1e74865 PEP8 formatting (#53)
218e0a2 (fix-11) Add template files etc. (#52)
4f865f1 Add stale action for Issues/PRs (#50)
e0cf627 adding status badges, online doc fixes (#49)
9565e2e set xticks (#48)
fc460bf added missing scaling figure
086fa2a Update simulation codes for Nest v3.0 (#9)
aec00dc (origin/legacy, legacy) Create python-publish.yml
8c656f0 readthedocs (#25)
47275fa Merge pull request #16 from INM-6/ci
fdea3cd Merge pull request #8 from INM-6/lfpy2.1
55a46d6 add badge
9ad6348 add conda-forge
ffd339d travisCI files
3425ef4 added some requirements stuff
605f0fd add pip requirements file
8872046 Merge pull request #7 from INM-6/LFPy_dev
3c36e02 fix
df590c4 fix for NEST 2.20
73fbe65 ignore macos files
aafa402 conda env file for hybridLFPy
f8b9045 updated to run w. NEST 2.20
f41451d version file
a5ee010 fixed brunel example w. nest 2.20 and lfpy 2.1
ac5b452 fix h5py deprecation warning
b99c00b h5py deprecated value attribute
1a6d21e updated microcircuit examples with parameter th_spike_generator_times
22ba172 Merge branch 'LFPy_dev' into spikegens
4c19636 Merge branch 'master' into LFPy_dev
e10a665 couple of print statements
0f1bfb2 fixes for python2
410d6c0 fixed sim script and plotting for figure 13
6365e3d python3 and matplotlib fixes to figure-generating scripts
e154323 fix networkSimParams dict
ecc1168 ntasks = 400
9fdde2c fixed LFPy deprecated params
e165d8e fix
e0fa283 example slurm jobscript fix
47627a4 Merge branch 'LFPy_dev' of github.com:espenhgn/hybridLFPy into LFPy_dev
862c3c8 fixes when NEURON is compiled with MPI
aebe951 python 3 fix
c38bdf3 removed mention of arXiv
42d382d updated README with correct citation
ab0d6b9 integer division
a440c0a close figs after file write
e483abc closing figures after writing files
de7e5b6 k_yXL must be integer
c827d77 fixed issue in gdf module w. Python 3
1207c25 minor fix w. python 3
5c9ef00 converted codes to Python 3.x
8759fb3 adapted cellParams dict to LFPy v.2
40a21f5 fixed g_pas values
4bc1ee2 use Agg as matplotlib backend if there is no DISPLAY env var
0a56d10 fullscale sim
a86aedf renamed test function, fixed tests
693fb75 adapt hybrid scheme to future LFPy v2
f8bd64b timeres_python and timeres_NEURON renamed to dt in LFPy:dev
fdfafbd updated docstring and examples for new kwarg X for class CachedNetwork
01be39b introducing kwarg X for population names in CachedNetwork classes
8407b0c dummy network spikes using poisson generators
c966373 nrnivmodl
3c5a534 removed .DS_Store files
8cc195c writing all figure files to root folder of example
20f93be nothing
0c5f2e2 number of simulation output path fixes
c223fdc readme updates
3ecdab0 script to write and submit Slurm jobscripts to cluster que added
a425255 added a COMM.Barrier() before trying to merge gdf files, some cleanup
314dfac dont need this file to be executable
80ae14b added files producing figures in Hagen et al, accepted in Cerebral Cortex
813879a can now set spike sequences explicitly for each TC neuron