add semsupport schema and yam files

pyproject.toml

@@ -74,7 +74,7 @@ select = [
     "UP",
     # isort
     "I",
-    # pylint 
+    # pylint
     "PL",
 ]
 
@@ -108,10 +108,12 @@ package-dir = { "" = "src" }
 where = ["src"]
 
 [project.entry-points.'nomad.plugin']
-myparser = "nomad_ikz_sem.parsers:myparser"
-mypackage = "nomad_ikz_sem.schema_packages:mypackage"
+# myparser = "nomad_ikz_sem.parsers:myparser"
+# mypackage = "nomad_ikz_sem.schema_packages:mypackage"
+
+# myapp = "nomad_ikz_sem.apps:myapp"
+semsupport = "nomad_ikz_sem.schema_packages:semsupport
 
-myapp = "nomad_ikz_sem.apps:myapp"
 [tool.cruft]
 # Avoid updating workflow files, this leads to permissions issues
 skip = [".github/*"]

src/nomad_ikz_sem/schema_packages/__init__.py

@@ -7,11 +7,25 @@ class MySchemaPackageEntryPoint(SchemaPackageEntryPoint):
 
     def load(self):
         from nomad_ikz_sem.schema_packages.mypackage import m_package
- 
+
         return m_package
 
 
 mypackage = MySchemaPackageEntryPoint(
     name='MyPackage',
     description='Schema package defined using the new plugin mechanism.',
 )
+
+class SEMSupportPackageEntryPoint(SchemaPackageEntryPoint):
+    parameter: int = Field(0, description='Custom configuration parameter')
+
+    def load(self):
+        from nomad_ikz_sem.schema_packages.semsupport import m_package
+
+        return m_package
+
+
+semsupport = SEMSupportPackageEntryPoint(
+    name='SEMSupport',
+    description='Schema package defined using the new plugin mechanism.',
+)

src/nomad_ikz_sem/schema_packages/semsupport.py

@@ -0,0 +1,172 @@
+#
+# Copyright The NOMAD Authors.
+#
+# This file is part of NOMAD. See https://nomad-lab.eu for further info.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+from nomad.datamodel.metainfo.basesections import Experiment, Entity, Process, Measurement
+from nomad.datamodel.data import EntryData
+import numpy as np
+from typing import (
+    TYPE_CHECKING,
+)
+from nomad.metainfo import (
+    MSection,
+    Package,
+    Quantity,
+    SubSection,
+    MEnum,
+    Reference,
+    Datetime,
+    Section,
+)
+from nomad.datamodel.data import (
+    EntryData,
+    ArchiveSection,
+    Author,
+)
+if TYPE_CHECKING:
+    from nomad.datamodel.datamodel import (
+        EntryArchive,
+    )
+    from structlog.stdlib import (
+        BoundLogger,
+    )
+
+m_package = Package(name='Scanning Electron Microscopy Support')
+
+class Bedampfen(Process, EntryData, ArchiveSection):
+    m_def = Section()
+    hallo = Quantity(
+        type=str,
+        a_eln={
+            "component": "StringEditQuantity"
+        },
+    )
+
+
+class ScanningElectronMicroscopy(Experiment, EntryData, ArchiveSection):
+    '''
+    Class autogenerated from yaml schema.
+    '''
+    m_def = Section()
+    Date = Quantity(
+        type=Datetime,
+        a_eln={
+            "component": "DateTimeEditQuantity"
+        },
+    )
+    hallo = Quantity(
+        type=Author,
+        a_eln={
+            "component": "AuthorEditQuantity"
+        },
+    )
+    sample_from = Quantity(
+        type=Author,
+        a_eln={
+            "component": "AuthorEditQuantity"
+        },
+    )
+    equipment = Quantity(
+        type=MEnum(['Nova 600', 'Apreo S']),
+        a_eln={
+            "component": "EnumEditQuantity"
+        },
+        shape=["2"],
+    )
+    measurement_method = Quantity(
+        type=MEnum(['Images', 'EDX', 'EBSD', 'CL']),
+        a_eln={
+            "component": "EnumEditQuantity"
+        },
+        shape=["4"],
+    )
+    material = Quantity(
+        type=str,
+        a_eln={
+            "component": "StringEditQuantity"
+        },
+    )
+    sampleID = Quantity(
+        type=str,
+        a_eln={
+            "component": "StringEditQuantity"
+        },
+        base_sections=["nomad.datamodel.data.EntryData"],
+    )
+    reference = Quantity(
+        type=Entity,
+        description='',
+        a_eln={
+            "component": "ReferenceEditQuantity"
+        },
+        shape=["*"],
+    )
+    preperation = Quantity(
+        type=str,
+        a_eln={
+            "component": "StringEditQuantity"
+        },
+    )
+    goal_or_question = Quantity(
+        type=str,
+        a_eln={
+            "component": "StringEditQuantity"
+        },
+        shape=["*"],
+    )
+    summary = Quantity(
+        type=str,
+        a_eln={
+            "component": "RichTextEditQuantity"
+        },
+        shape=["*"],
+    )
+    data_file = Quantity(
+        type=str,
+        description='''
+        #The png file name.
+        ''',
+        a_eln={
+            "component": "FileEditQuantity"
+        },
+        a_browser={
+            "adaptor": "RawFileAdaptor"
+        },
+        shape=["*"],
+    )
+    data_link = Quantity(
+        type=str,
+        description='',
+        a_eln={
+            "component": "URLEditQuantity"
+        },
+        shape=["*"],
+    )
+
+    def normalize(self, archive: 'EntryArchive', logger: 'BoundLogger') -> None:
+        '''
+        The normalizer for the `ElectronMicroscopy` class.
+
+        Args:
+            archive (EntryArchive): The archive containing the section that is being
+            normalized.
+            logger (BoundLogger): A structlog logger.
+        '''
+        super().normalize(archive, logger)
+
+
+m_package.__init_metainfo__()

tests/data/bedampfentest.archive.yaml

@@ -0,0 +1,4 @@
+data:
+  m_def: nomad_ikz_sem.schema_packages.semsupport.Bedampfen
+  name: Markus
+  hallo: Sebastian Brückner

tests/data/semtest.archive.yaml

@@ -0,0 +1,4 @@
+data:
+  m_def: nomad_ikz_sem.schema_packages.semsupport.ScanningElectronMicroscopy
+  name: Markus
+  hallo: Sebastian Brückner

yamlschemas/emsupport.schema.archive.yaml

@@ -65,7 +65,7 @@ definitions:
                 Reference:
                     type: nomad.datamodel.data.EntryData
                     shape: ['*']
-                    description:
+                    description: ''
                     m_annotations:
                         eln:
                             component: ReferenceEditQuantity
@@ -101,7 +101,7 @@ definitions:
                 Data_link:
                     type: string
                     shape: ['*']
-                    description:
+                    description: ''
                     m_annotations:
                         eln:
                             component: URLEditQuantity

yamlschemas/sem_support.py

@@ -10,7 +10,7 @@
 
 import numpy as np
 from nomad.config import config
-from nomad.datamodel.data import ArchiveSection, EntryData, EntryDataCategory, Schema
+from nomad.datamodel.data import ArchiveSection, EntryData, EntryDataCategory, Schema, Author
 from nomad.datamodel.metainfo.annotations import (
     ELNAnnotation,
     ELNComponentEnum,
@@ -158,7 +158,7 @@ def __init__(self):
                             }
                         }
                     },
-                    
+
                     "FEG": {
                         "type": np.float64,
                         "shape": ['*'],
@@ -203,7 +203,7 @@ def __init__(self):
                             }
                         }
                     },
-                    
+
                     "Comment": {
                         "type": str,
                         "m_annotations": {
@@ -215,7 +215,7 @@ def __init__(self):
                 }
             }
         }
-       
+