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ANNEXA v.3.2.0

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@N-Hoffmann N-Hoffmann released this 20 Dec 10:03
v3.2.0
20609b9
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Learn about vigilant mode.

New features:

  • Added Stringtie2 as alternative transcript reconstruction tool (--tx_discovery stringtie2). Bambu is used as default tool.
  • Added CDS prediction with TransDecoder. CDS information is added to extended annotations.
  • Added gffcompare class codes information in extended annotations
  • Updated Bambu to version 3.4.0
  • Added ability to keep or discard single exon transcripts (SET) when using Bambu (--bambu_singleexon). SETs are kept by default.
  • Added --help information.

Changes:

  • Reworked QC pdf.
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