Removed timecourse from types and added to biomaterial core. Fixes #1511

changelog.md

@@ -7,6 +7,34 @@ and (starting with v4.0.0) this project adheres to [Semantic Versioning](http://
 
 ## [Unreleased](https://github.com/HumanCellAtlas/metadata-schema/tree/staging)
 
+### [core/biomaterial/biomaterial_core.json - v8.4.0] - 2023-08-22
+### Added
+Added timecourse module. Fixes #1511
+
+### [type/biomaterial/donor_organism.json - v16.0.0] - 2023-08-22
+### Removed
+Removed timecourse module.
+
+### [type/biomaterial/cell_suspension.json - v14.0.0] - 2023-08-22
+### Removed
+Removed timecourse module.
+
+### [type/biomaterial/cell_line.json - v16.0.0] - 2023-08-22
+### Removed
+Removed timecourse module.
+
+### [type/biomaterial/imaged_specimen.json - v3.5.0] - 2023-08-22
+### Added
+Added timecourse module. Fixes #1511
+
+### [type/biomaterial/specimen_from_organism.json - v10.8.0] - 2023-08-22
+### Added
+Added timecourse module. Fixes #1511
+
+### [type/biomaterial/organoid.json - v11.5.0] - 2023-08-22
+### Added
+Added timecourse module. Fixes #1511
+
 ## [Released](https://github.com/HumanCellAtlas/metadata-schema/)
 
 ### [module/project/hca_bionetwork.json - v1.0.1] - 2023-05-22

docs/jsonBrowser/core.md

@@ -61,6 +61,7 @@ supplementary_files | A list of filenames of biomaterial-level supplementary fil
 biosamples_accession | A BioSamples accession. | string | no |  | BioSamples accession |  | SAMN00000000
 insdc_sample_accession | An International Nucleotide Sequence Database Collaboration (INSDC) sample accession. | string | no |  | INSDC sample accession |  | SRS0000000
 HDBR_accession | A Human Developmental Biology Resource (HDBR) sample accession. | string | no |  | HDBR accession |  | 34526; 14758, 2, liver
+timecourse | Information relating to a timecourse associated with this biomaterial. | object | no | [See module  timecourse](module.md#timecourse) | Timecourse |  | 
 
 ## Process core<a name='Process core'></a>
 _Information relevant to how a biomaterial or file was converted into another biomaterial or file._

docs/jsonBrowser/type.md

@@ -361,7 +361,6 @@ genus_species | The scientific binomial name for the species of the suspension.
 selected_cell_types | The cell type(s) selected to be present in the suspension. | array | no | [See module  cell_type_ontology](module.md#cell-type-ontology) | Selected cell type(s) |  | 
 estimated_cell_count | Estimated number of cells in the suspension. | integer | no |  | Estimated cell count |  | 1; 2100
 plate_based_sequencing | Fields specific for plate-based sequencing experiments. | object | no | [See module  plate_based_sequencing](module.md#plate-based-sequencing) | Plate-based sequencing |  | 
-timecourse | Information relating to a timecourse associated with this cell suspension. | object | no | [See module  timecourse](module.md#timecourse) | Timecourse |  | 
 
 ## Cell line
 _Information about the cell line or cell culture biomaterial._
@@ -390,7 +389,6 @@ date_established | Date when the cell line was established. | string | no |  | D
 disease | Short description of any disease association to the cell type. | object | no | [See module  disease_ontology](module.md#disease-ontology) | Disease |  | 
 genus_species | The scientific binomial name for the species of the cell line. | array | no | [See module  species_ontology](module.md#species-ontology) | Genus species |  | 
 publication | A publication that cites the cell line creation. | object | no | [See module  publication](module.md#publication) | Publication |  | 
-timecourse | Information relating to a timecourse associated with this cell line. | object | no | [See module  timecourse](module.md#timecourse) | Timecourse |  | 
 
 ## Imaged specimen
 _Information about a tissue specimen after it has been sectioned and prepared for imaging._
@@ -434,7 +432,6 @@ height | Height of organism in Height unit. | string | no |  | Height |  | 160;
 height_unit | The unit in which Height is expressed. | object | no | [See module  length_unit_ontology](module.md#length-unit-ontology) | Height unit |  | 
 weight | Weight of organism in Weight unit. | string | no |  | Weight |  | 60; 40-60
 weight_unit | The unit in which Weight is expressed. | object | no | [See module  mass_unit_ontology](module.md#mass-unit-ontology) | Weight unit |  | 
-timecourse | Information relating to a timecourse associated with this biomaterial. | object | no | [See module  timecourse](module.md#timecourse) | Timecourse |  | 
 
 ## Organoid
 _Information about an organoid biomaterial._

json_schema/core/biomaterial/biomaterial_core.json

@@ -83,6 +83,12 @@
             "user_friendly": "HDBR accession",
             "example": "34526; 14758, 2, liver",
             "guidelines": "Enter accession if sample has been obtained from the Human Developmental Biology Resource (HDBR)."
+        },
+        "timecourse": {
+            "description": "Information relating to a timecourse associated with this biomaterial.",
+            "type": "object",
+            "$ref": "module/biomaterial/timecourse.json",
+            "user_friendly": "Timecourse"
         }
     }
 }

json_schema/property_migrations.json

@@ -1,5 +1,32 @@
 {
     "migrations": [
+        {
+            "source_schema": "cell_line",
+            "property": "timecourse",
+            "target_schema": "cell_line",
+            "replaced_by": "biomaterial_core.timecourse",
+            "effective_from": "16.0.0",
+            "reason": "Timecourse module has been moved to biomaterial core",
+            "type": "moved property"
+        },
+        {
+            "source_schema": "donor_organism",
+            "property": "timecourse",
+            "target_schema": "donor_organism",
+            "replaced_by": "biomaterial_core.timecourse",
+            "effective_from": "16.0.0",
+            "reason": "Timecourse module has been moved to biomaterial core",
+            "type": "moved property"
+        },
+        {
+            "source_schema": "cell_suspension",
+            "property": "timecourse",
+            "target_schema": "cell_suspension",
+            "replaced_by": "biomaterial_core.timecourse",
+            "effective_from": "14.0.0",
+            "reason": "Timecourse module has been moved to biomaterial core",
+            "type": "moved property"
+        },
         {
             "source_schema": "analysis_file",
             "property": "genome_assembly_version",

json_schema/type/biomaterial/cell_line.json

@@ -155,12 +155,6 @@
             "type": "object",
             "$ref": "module/project/publication.json",
             "user_friendly": "Publication"
-        },
-        "timecourse": {
-            "description": "Information relating to a timecourse associated with this cell line.",
-            "type": "object",
-            "$ref": "module/biomaterial/timecourse.json",
-            "user_friendly": "Timecourse"
         }
     }
 }

json_schema/type/biomaterial/cell_suspension.json

@@ -83,12 +83,6 @@
             "type": "object",
             "$ref": "module/process/sequencing/plate_based_sequencing.json",
             "user_friendly": "Plate-based sequencing"
-        },
-        "timecourse": {
-            "description": "Information relating to a timecourse associated with this cell suspension.",
-            "type": "object",
-            "$ref": "module/biomaterial/timecourse.json",
-            "user_friendly": "Timecourse"
         }
      }
 }

json_schema/type/biomaterial/donor_organism.json

@@ -178,12 +178,6 @@
             "type": "object",
             "$ref": "module/ontology/mass_unit_ontology.json",
             "user_friendly": "Weight unit"
-        },
-        "timecourse": {
-            "description": "Information relating to a timecourse associated with this biomaterial.",
-            "type": "object",
-            "$ref": "module/biomaterial/timecourse.json",
-            "user_friendly": "Timecourse"
         }
     }
 }

json_schema/versions.json

@@ -1,9 +1,9 @@
 {
-    "last_update_date": "2023-05-22T11:01:09Z",
+    "last_update_date": "2023-08-22T11:35:16Z",
     "version_numbers": {
         "core": {
             "biomaterial": {
-                "biomaterial_core": "8.2.0"
+                "biomaterial_core": "8.4.0"
             },
             "file": {
                 "file_core": "6.4.0"
@@ -89,12 +89,12 @@
         },
         "type": {
             "biomaterial": {
-                "cell_line": "15.1.0",
-                "cell_suspension": "13.3.0",
-                "donor_organism": "15.6.1",
-                "imaged_specimen": "3.3.0",
-                "organoid": "11.3.0",
-                "specimen_from_organism": "10.6.0"
+                "cell_line": "16.0.0",
+                "cell_suspension": "14.0.0",
+                "donor_organism": "16.0.0",
+                "imaged_specimen": "3.5.0",
+                "organoid": "11.5.0",
+                "specimen_from_organism": "10.8.0"
             },
             "file": {
                 "analysis_file": "7.0.0",