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Merge pull request #1579 from HumanCellAtlas/ac-disease-profile-modul…
…e-Issue1578 Added disease_profile module to donor_organism. Fixes#1578
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,82 @@ | ||
| { | ||
| "$schema": "http://json-schema.org/draft-07/schema#", | ||
| "description": "Information about specific diseases profile of the individual.", | ||
| "additionalProperties": false, | ||
| "title": "Disease profile", | ||
| "name": "disease_profile", | ||
| "type": "object", | ||
| "minProperties": 1, | ||
| "properties": { | ||
| "describedBy": { | ||
| "description": "The URL reference to the schema.", | ||
| "type": "string", | ||
| "pattern" : "^(http|https)://schema.(.*?)humancellatlas.org/module/biomaterial/(([0-9]{1,}.[0-9]{1,}.[0-9]{1,})|([a-zA-Z]*?))/disease_profile" | ||
| }, | ||
| "schema_version": { | ||
| "description": "The version number of the schema in major.minor.patch format.", | ||
| "type": "string", | ||
| "pattern": "^[0-9]{1,}.[0-9]{1,}.[0-9]{1,}$", | ||
| "example": "0.0.1" | ||
| }, | ||
| "copd_gold_stage": { | ||
| "user_friendly": "GOLD stage", | ||
| "description": "Indicate the current GOLD stage (Global Initiative for Chronic Obstructive Lung Disease).", | ||
| "type": "integer", | ||
| "enum": [1, 2, 3, 4], | ||
| "example": "1; 2; 3; 4", | ||
| "bionetworks": ["lung"], | ||
| "guidelines": "Should be one of 1, 2, 3, 4" | ||
| }, | ||
| "copd_mmrc_grade": { | ||
| "user_friendly": "mMRC grade", | ||
| "description": "Indicate the Modified British Medical Research Council (mMRC) dyspnea scale grade.", | ||
| "type": "integer", | ||
| "enum": [0, 1, 2, 3, 4], | ||
| "example": "0, 1; 2; 3; 4", | ||
| "bionetworks": ["lung"], | ||
| "guidelines": "Should be one of 0, 1, 2, 3, 4" | ||
| }, | ||
| "copd_cat_score": { | ||
| "user_friendly": "CAT score", | ||
| "description": "Indicate the COPD Assessment Test (CAT) score.", | ||
| "type": "integer", | ||
| "minimum": 0, | ||
| "maximum": 40, | ||
| "example": "2; 5; 37", | ||
| "bionetworks": ["lung"], | ||
| "guidelines": "Should be between 0 and 40." | ||
| }, | ||
| "copd_gold_abe_assessment": { | ||
| "user_friendly": "GOLD ABE assessment", | ||
| "description": "Indicate the Global Initiative for Chronic Obstructive Lung Disease (GOLD) A, B, C, D assessment group if available.", | ||
| "type": "string", | ||
| "enum": ["A", "B", "E"], | ||
| "example": "A; B; E", | ||
| "bionetworks": ["lung"], | ||
| "guidelines": "Should be one of A, B, E" | ||
|
|
||
| }, | ||
| "copd_phenotype": { | ||
| "user_friendly": "COPD phenotype", | ||
| "description": "Indicate the COPD disease phenotype(s) of donor. Please indicate all applicable phenotypes of donor.", | ||
| "type": "array", | ||
| "items": { | ||
| "type": "string", | ||
| "enum": ["COPD not otherwise specified", "COPD with emphysema", "COPD with bronchitis", | ||
| "COPD with history of asthma", "COPD with >300 eos in blood", "COPD with allergy", | ||
| "COPD with Chronic Mucus Hypersecretion", "COPD with frequent exacerbations"] | ||
| }, | ||
| "example": "COPD with bronchitis; COPD with history of asthma; COPD with emphysema", | ||
| "bionetworks": ["lung"], | ||
| "guidelines": "Should be one or more of: COPD not otherwise specified, COPD with emphysema, COPD with bronchitis, COPD with history of asthma, COPD with >300 eos in blood, COPD with allergy, COPD with Chronic Mucus Hypersecretion, COPD with frequent exacerbations" | ||
| }, | ||
| "copd_emphysema_percentage": { | ||
| "user_friendly": "Percentage of emphysema", | ||
| "description": "Indicate the percentage of the lung that is affected by emphysema as judged based on non-invasive imaging, such as from a CT scan.", | ||
| "type": "number", | ||
| "maximum": 150, | ||
| "minimum": 0, | ||
| "bionetworks": ["lung"] | ||
| } | ||
| } | ||
| } |
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