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@arschat Revert removal of required_fields.md
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arschat authored Sep 30, 2024
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Expand Up @@ -354,3 +354,42 @@ _There are no required properties in schema Growth conditions_
_There are no required properties in schema Medical tests_
### Disease profile<a name='Disease profile'></a>
_There are no required properties in schema Disease profile_
### Preservation and storage<a name='Preservation and storage'></a>
_There are no required properties in schema Preservation and storage_
### Death<a name='Death'></a>
Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example
--- | --- | --- | --- | --- | --- | ---
cause_of_death | Conditions resulting in death. | string | | Cause of death | | Hypoxic brain damage; Sudden cardiac arrest
### Familial relationship<a name='Familial relationship'></a>
_There are no required properties in schema Familial relationship_
### Medical history<a name='Medical history'></a>
_There are no required properties in schema Medical history_
### Cell morphology<a name='Cell morphology'></a>
_There are no required properties in schema Cell morphology_
### State of specimen<a name='State of specimen'></a>
_There are no required properties in schema State of specimen_
### Timecourse<a name='Timecourse'></a>
Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example
--- | --- | --- | --- | --- | --- | ---
value | The numerical value in Timecourse unit associated with a time interval used in the experiment. | string | | Timecourse value | | 2; 5.5-10.5
unit | The unit in which the Timecourse value is expressed. | object | [See module time_unit_ontology](module.md#time-unit-ontology) | Timecourse unit | |
### Mouse-specific<a name='Mouse-specific'></a>
_There are no required properties in schema Mouse-specific_
### Purchased reagents<a name='Purchased reagents'></a>
_There are no required properties in schema Purchased reagents_
### INSDC experiment<a name='INSDC experiment'></a>
Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example
--- | --- | --- | --- | --- | --- | ---
insdc_experiment_accession | An International Nucleotide Sequence Database Collaboration (INSDC) experiment accession. | string | | INSDC experiment accession | | SRX0000000
### Barcode<a name='Barcode'></a>
Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example
--- | --- | --- | --- | --- | --- | ---
barcode_read | The read in which the barcode is found. | string | | Barcode-containing read | Read 1, Read 2, Read 3, Read 4, i7 Index, i5 Index | Should be one of: Read 1, Read 2, i7 Index, or i5 Index.
barcode_offset | The 0-based offset of start of barcode in read. | integer | | Barcode offset | | 0
barcode_length | Length of barcode in nucleotides. | integer | | Barcode length | | 28
### 10x-specific<a name='10x-specific'></a>
_There are no required properties in schema 10x-specific_
### Plate-based sequencing<a name='Plate-based sequencing'></a>
Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example
--- | --- | --- | --- | --- | --- | ---
plate_label | A label or name for the plate on which the well is located. | string | | Plate label | | 2217

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