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local/
fasta_virusquality_checkv/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"subworkflows/local/fasta_virusquality_checkv/main.nf" -> "workflows/phageannotator/main.nf";
	"subworkflows/local/fasta_virusquality_checkv/main.nf" -> "subworkflows/local/fasta_virusquality_checkv/tests/main.nf.test";
	"modules/nf-core/bowtie2/build/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/nf-core/bowtie2/build/tests/main.nf.test.snap" -> "modules/nf-core/bowtie2/build/tests/main.nf.test";
	"modules/local/phist/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/prophagetracer/wgs/main.nf" [label="modules/
local/
prophagetracer/
wgs/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/prophagetracer/wgs/main.nf" -> "modules/local/prophagetracer/wgs/tests/main.nf.test";
	"subworkflows/local/fastqfasta_virusextension_cobra/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/seqkit/seq/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/nf-core/seqkit/grep/main.nf" [label="modules/
nf-core/
seqkit/
grep/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/seqkit/grep/main.nf" -> "subworkflows/local/fasta_anicluster_blast/main.nf";
	"modules/nf-core/seqkit/grep/main.nf" -> "modules/nf-core/seqkit/grep/tests/main.nf.test";
	"modules/nf-core/cobrameta/main.nf" [label="modules/
nf-core/
cobrameta/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/cobrameta/main.nf" -> "modules/nf-core/cobrameta/tests/main.nf.test";
	"modules/nf-core/cobrameta/main.nf" -> "subworkflows/local/fastqfasta_virusextension_cobra/main.nf";
	"workflows/phageannotator/fasta_virusanalysis_tsv/virus_analyze.nf" [label="workflows/
phageannotator/
fasta_virusanalysis_tsv/
virus_analyze.nf", shape="box3d", fillcolor="1", style="rounded,filled"]
	"modules/local/phables/install/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/nf-core/genomad/endtoend/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/prophagetracer/wgs/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/logan/download/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/nf-core/fastqc/main.nf" [label="modules/
nf-core/
fastqc/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/fastqc/main.nf" -> "modules/nf-core/fastqc/tests/main.nf.test";
	"modules/nf-core/fastqc/main.nf" -> "workflows/fastq_readpreprocessing_fastq/main.nf";
	"modules/nf-core/fastqc/main.nf" -> "workflows/phageannotator/main.nf";
	"modules/local/fetchngs/sra_fastq_ftp/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/fetchngs/sra_fastq_ftp/tests/main.nf.test.snap" -> "modules/local/fetchngs/sra_fastq_ftp/tests/main.nf.test";
	"modules/local/fetchngs/asperacli/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/fetchngs/asperacli/tests/main.nf.test.snap" -> "modules/local/fetchngs/asperacli/tests/main.nf.test";
	"subworkflows/local/fasta_virusquality_checkv/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/checkv/aniclust/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/checkv/aniclust/tests/main.nf.test.snap" -> "modules/local/checkv/aniclust/tests/main.nf.test";
	"modules/local/phables/run/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/phables/run/tests/main.nf.test.snap" -> "modules/local/phables/run/tests/main.nf.test";
	"subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test.snap" -> "subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test";
	"modules/local/coverm/contig/main.nf" [label="modules/
local/
coverm/
contig/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/coverm/contig/main.nf" -> "workflows/phageannotator/main.nf";
	"modules/local/coverm/contig/main.nf" -> "subworkflows/local/fastqfasta_virusextension_cobra/main.nf";
	"modules/local/coverm/contig/main.nf" -> "modules/local/coverm/contig/tests/main.nf.test";
	"modules/nf-core/genomad/download/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/trfinder/main.nf" [label="modules/
local/
trfinder/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/trfinder/main.nf" -> "modules/local/trfinder/tests/main.nf.test";
	"modules/nf-core/sratools/prefetch/main.nf" [label="modules/
nf-core/
sratools/
prefetch/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/sratools/prefetch/main.nf" -> "modules/nf-core/sratools/prefetch/tests/main.nf.test";
	"modules/nf-core/sratools/prefetch/main.nf" -> "subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/main.nf";
	"subworkflows/local/fastq_hostremoval_bowtie2/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"subworkflows/local/fastq_hostremoval_bowtie2/tests/main.nf.test.snap" -> "subworkflows/local/fastq_hostremoval_bowtie2/tests/main.nf.test";
	"modules/local/phables/run/main.nf" [label="modules/
local/
phables/
run/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/phables/run/main.nf" -> "subworkflows/local/fastqgfa_virusextension_phables/main.nf";
	"modules/local/phables/run/main.nf" -> "modules/local/phables/run/tests/main.nf.test";
	"modules/nf-core/pharokka/pharokka/main.nf" [label="modules/
nf-core/
pharokka/
pharokka/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/pharokka/pharokka/main.nf" -> "modules/nf-core/pharokka/pharokka/tests/main.nf.test";
	"modules/nf-core/pharokka/pharokka/main.nf" -> "subworkflows/local/fasta_phagefunction_pharokka/main.nf";
	"modules/local/fetchngs/sra_runinfo_to_ftp/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/fetchngs/sra_runinfo_to_ftp/tests/main.nf.test.snap" -> "modules/local/fetchngs/sra_runinfo_to_ftp/tests/main.nf.test";
	"modules/nf-core/sratools/prefetch/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"lib/functions.nf" [label="lib/
functions.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"lib/functions.nf" -> "lib/main.nf.test";
	"modules/nf-core/genomad/endtoend/main.nf" [label="modules/
nf-core/
genomad/
endtoend/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/genomad/endtoend/main.nf" -> "subworkflows/local/fasta_virusclassification_genomad/main.nf";
	"modules/nf-core/genomad/endtoend/main.nf" -> "workflows/phageannotator/main.nf";
	"modules/nf-core/genomad/endtoend/main.nf" -> "modules/nf-core/genomad/endtoend/tests/main.nf.test";
	"modules/nf-core/samtools/stats/main.nf" [label="modules/
nf-core/
samtools/
stats/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/samtools/stats/main.nf" -> "modules/nf-core/samtools/stats/tests/main.nf.test";
	"modules/nf-core/cat/fastq/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/nf-core/cat/fastq/tests/main.nf.test.snap" -> "modules/nf-core/cat/fastq/tests/main.nf.test";
	"modules/nf-core/sratools/fasterqdump/main.nf" [label="modules/
nf-core/
sratools/
fasterqdump/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/sratools/fasterqdump/main.nf" -> "modules/nf-core/sratools/fasterqdump/tests/main.nf.test";
	"modules/nf-core/sratools/fasterqdump/main.nf" -> "subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/main.nf";
	"workflows/phageannotator/fastq_readassembly_fasta/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"subworkflows/local/fasta_virusclassification_genomad/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test.snap" -> "subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test";
	"modules/local/nucleotidestats/main.nf" [label="modules/
local/
nucleotidestats/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/nucleotidestats/main.nf" -> "modules/local/nucleotidestats/tests/main.nf.test";
	"modules/local/nucleotidestats/main.nf" -> "workflows/phageannotator/main.nf";
	"modules/nf-core/bowtie2/align/main.nf" [label="modules/
nf-core/
bowtie2/
align/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/bowtie2/align/main.nf" -> "modules/nf-core/bowtie2/align/tests/main.nf.test";
	"modules/nf-core/bowtie2/align/main.nf" -> "subworkflows/local/fastq_hostremoval_bowtie2/main.nf";
	"subworkflows/local/fasta_anicluster_blast/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/plass/penguin/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/plass/penguin/tests/main.nf.test.snap" -> "modules/local/plass/penguin/tests/main.nf.test";
	"subworkflows/local/fasta_virusclassification_genomad/main.nf" [label="subworkflows/
local/
fasta_virusclassification_genomad/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"subworkflows/local/fasta_virusclassification_genomad/main.nf" -> "subworkflows/local/fasta_virusclassification_genomad/tests/main.nf.test";
	"subworkflows/local/fasta_virusclassification_genomad/main.nf" -> "workflows/phageannotator/main.nf";
	"modules/nf-core/gunzip/main.nf" [label="modules/
nf-core/
gunzip/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/gunzip/main.nf" -> "modules/nf-core/gunzip/tests/main.nf.test";
	"modules/nf-core/gunzip/main.nf" -> "subworkflows/local/fastqfasta_provirusactivity_prophagetracer/main.nf";
	"modules/nf-core/gunzip/main.nf" -> "subworkflows/local/fastqfasta_provirusactivity_propagate/main.nf";
	"modules/local/csvtk/sep/main.nf" [label="modules/
local/
csvtk/
sep/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/csvtk/sep/main.nf" -> "modules/local/csvtk/sep/tests/main.nf.test";
	"modules/local/csvtk/sep/main.nf" -> "subworkflows/local/fastqfasta_virusextension_cobra/main.nf";
	"modules/nf-core/pharokka/pharokka/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/nf-core/pharokka/pharokka/tests/main.nf.test.snap" -> "modules/nf-core/pharokka/pharokka/tests/main.nf.test";
	"workflows/phageannotator/fasta_virusannotation_tsv/virus_annotate.nf" [label="workflows/
phageannotator/
fasta_virusannotation_tsv/
virus_annotate.nf", shape="box3d", fillcolor="1", style="rounded,filled"]
	"modules/nf-core/multiqc/main.nf" [label="modules/
nf-core/
multiqc/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/multiqc/main.nf" -> "modules/nf-core/multiqc/tests/main.nf.test";
	"modules/nf-core/multiqc/main.nf" -> "main.nf";
	"modules/nf-core/multiqc/main.nf" -> "workflows/phageannotator/main.nf";
	"modules/local/csvtk/sep/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/csvtk/sep/tests/main.nf.test.snap" -> "modules/local/csvtk/sep/tests/main.nf.test";
	"modules/local/checkv/aniclust/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/nf-core/sratools/fasterqdump/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/nf-core/blast/blastn/main.nf" [label="modules/
nf-core/
blast/
blastn/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/blast/blastn/main.nf" -> "subworkflows/local/fasta_anicluster_blast/main.nf";
	"modules/nf-core/blast/blastn/main.nf" -> "modules/nf-core/blast/blastn/tests/main.nf.test";
	"subworkflows/local/csv_sradownload_fetchngs/main.nf" [label="subworkflows/
local/
csv_sradownload_fetchngs/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"subworkflows/local/csv_sradownload_fetchngs/main.nf" -> "workflows/phageannotator/main.nf";
	"subworkflows/local/csv_sradownload_fetchngs/main.nf" -> "subworkflows/local/csv_sradownload_fetchngs/tests/main.nf.test";
	"modules/nf-core/cobrameta/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/phables/install/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/phables/install/tests/main.nf.test.snap" -> "modules/local/phables/install/tests/main.nf.test";
	"modules/nf-core/blast/blastn/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/nf-core/checkv/downloaddatabase/main.nf" [label="modules/
nf-core/
checkv/
downloaddatabase/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/checkv/downloaddatabase/main.nf" -> "modules/nf-core/checkv/downloaddatabase/tests/main.nf.test";
	"modules/nf-core/checkv/downloaddatabase/main.nf" -> "subworkflows/local/fasta_virusquality_checkv/main.nf";
	"modules/nf-core/checkv/downloaddatabase/main.nf" -> "modules/nf-core/checkv/updatedatabase/tests/main.nf.test";
	"modules/nf-core/checkv/downloaddatabase/main.nf" -> "modules/nf-core/checkv/endtoend/tests/main.nf.test";
	"modules/local/seqkit/stats/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/seqkit/stats/tests/main.nf.test.snap" -> "modules/local/seqkit/stats/tests/main.nf.test";
	"modules/local/viromeqc/install/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/viromeqc/install/tests/main.nf.test.snap" -> "modules/local/viromeqc/install/tests/main.nf.test";
	"modules/local/tantan/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/tantan/tests/main.nf.test.snap" -> "modules/local/tantan/tests/main.nf.test";
	"modules/local/coverm/contig/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/nf-core/genomad/download/main.nf" [label="modules/
nf-core/
genomad/
download/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/genomad/download/main.nf" -> "subworkflows/local/fasta_virusclassification_genomad/tests/main.nf.test";
	"modules/nf-core/genomad/download/main.nf" -> "subworkflows/local/fasta_virusclassification_genomad/main.nf";
	"modules/nf-core/genomad/download/main.nf" -> "modules/nf-core/genomad/download/tests/main.nf.test";
	"modules/nf-core/genomad/download/main.nf" -> "modules/nf-core/genomad/endtoend/tests/main.nf.test";
	"main.nf" [label="main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"main.nf" -> "tests/main.nf.test";
	"subworkflows/local/fasta_anicluster_blast/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"subworkflows/local/fasta_anicluster_blast/tests/main.nf.test.snap" -> "subworkflows/local/fasta_anicluster_blast/tests/main.nf.test";
	"modules/local/fetchngs/asperacli/main.nf" [label="modules/
local/
fetchngs/
asperacli/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/fetchngs/asperacli/main.nf" -> "subworkflows/local/csv_sradownload_fetchngs/main.nf";
	"modules/local/fetchngs/asperacli/main.nf" -> "modules/local/fetchngs/asperacli/tests/main.nf.test";
	"modules/local/prophagetracer/wgs/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/prophagetracer/wgs/tests/main.nf.test.snap" -> "modules/local/prophagetracer/wgs/tests/main.nf.test";
	"modules/local/viromeqc/install/main.nf" [label="modules/
local/
viromeqc/
install/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/viromeqc/install/main.nf" -> "modules/local/viromeqc/install/tests/main.nf.test";
	"modules/local/viromeqc/install/main.nf" -> "subworkflows/local/fastq_virusenrichment_viromeqc/tests/main.nf.test";
	"modules/local/viromeqc/install/main.nf" -> "modules/local/viromeqc/viromeqc/tests/main.nf.test";
	"modules/local/viromeqc/install/main.nf" -> "subworkflows/local/fastq_virusenrichment_viromeqc/main.nf";
	"subworkflows/local/fastq_hostremoval_bowtie2/main.nf" [label="subworkflows/
local/
fastq_hostremoval_bowtie2/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"subworkflows/local/fastq_hostremoval_bowtie2/main.nf" -> "subworkflows/local/fastq_hostremoval_bowtie2/tests/main.nf.test";
	"subworkflows/local/fastq_hostremoval_bowtie2/main.nf" -> "workflows/fastq_readpreprocessing_fastq/main.nf";
	"subworkflows/local/fastq_hostremoval_bowtie2/main.nf" -> "workflows/phageannotator/main.nf";
	"modules/nf-core/cobrameta/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/nf-core/cobrameta/tests/main.nf.test.snap" -> "modules/nf-core/cobrameta/tests/main.nf.test";
	"subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"subworkflows/local/csv_sradownload_fetchngs/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"subworkflows/local/csv_sradownload_fetchngs/tests/main.nf.test.snap" -> "subworkflows/local/csv_sradownload_fetchngs/tests/main.nf.test";
	"tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/phist/main.nf" [label="modules/
local/
phist/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/phist/main.nf" -> "modules/local/phist/tests/main.nf.test";
	"subworkflows/local/fasta_phagehost_iphop/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"subworkflows/local/fasta_phagehost_iphop/tests/main.nf.test.snap" -> "subworkflows/local/fasta_phagehost_iphop/tests/main.nf.test";
	"modules/nf-core/fastp/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/nf-core/spades/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/nf-core/spades/tests/main.nf.test.snap" -> "modules/nf-core/spades/tests/main.nf.test";
	"modules/local/cleanup/cleanworkdirs/main.nf" [label="modules/
local/
cleanup/
cleanworkdirs/
main.nf", shape="box3d", fillcolor="1", style="rounded,filled"]
	"modules/local/checkv/anicalc/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/nf-core/bowtie2/build/main.nf" [label="modules/
nf-core/
bowtie2/
build/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/bowtie2/build/main.nf" -> "modules/nf-core/bowtie2/align/tests/main.nf.test";
	"modules/nf-core/bowtie2/build/main.nf" -> "subworkflows/local/fastq_hostremoval_bowtie2/main.nf";
	"modules/nf-core/bowtie2/build/main.nf" -> "modules/nf-core/bowtie2/build/tests/main.nf.test";
	"modules/nf-core/sratools/fasterqdump/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/nf-core/sratools/fasterqdump/tests/main.nf.test.snap" -> "modules/nf-core/sratools/fasterqdump/tests/main.nf.test";
	"modules/nf-core/fastqc/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/nf-core/fastqc/tests/main.nf.test.snap" -> "modules/nf-core/fastqc/tests/main.nf.test";
	"modules/nf-core/checkv/endtoend/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"subworkflows/local/fasta_anicluster_blast/main.nf" [label="subworkflows/
local/
fasta_anicluster_blast/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"subworkflows/local/fasta_anicluster_blast/main.nf" -> "workflows/phageannotator/main.nf";
	"subworkflows/local/fasta_anicluster_blast/main.nf" -> "subworkflows/local/fasta_anicluster_blast/tests/main.nf.test";
	"modules/nf-core/multiqc/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/nf-core/custom/sratoolsncbisettings/main.nf" [label="modules/
nf-core/
custom/
sratoolsncbisettings/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/custom/sratoolsncbisettings/main.nf" -> "modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test";
	"modules/nf-core/custom/sratoolsncbisettings/main.nf" -> "subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/main.nf";
	"subworkflows/local/fastq_hostremoval_bowtie2/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/logan/download/main.nf" [label="modules/
local/
logan/
download/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/logan/download/main.nf" -> "workflows/phageannotator/main.nf";
	"modules/local/logan/download/main.nf" -> "modules/local/logan/download/tests/main.nf.test";
	"modules/nf-core/genomad/endtoend/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/nf-core/genomad/endtoend/tests/main.nf.test.snap" -> "modules/nf-core/genomad/endtoend/tests/main.nf.test";
	"subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/main.nf" [label="subworkflows/
nf-core/
fastq_download_prefetch_fasterqdump_sratools/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/main.nf" -> "subworkflows/local/csv_sradownload_fetchngs/main.nf";
	"subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/main.nf" -> "subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test";
	"modules/nf-core/untar/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/nf-core/untar/tests/main.nf.test.snap" -> "modules/nf-core/untar/tests/main.nf.test";
	"workflows/fastq_readpreprocessing_fastq/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/coverm/contig/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/coverm/contig/tests/main.nf.test.snap" -> "modules/local/coverm/contig/tests/main.nf.test";
	"subworkflows/local/fastqgfa_virusextension_phables/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"subworkflows/local/fasta_phagehost_iphop/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/fastg2gfa/main.nf" [label="modules/
local/
fastg2gfa/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/fastg2gfa/main.nf" -> "workflows/phageannotator/main.nf";
	"modules/local/fastg2gfa/main.nf" -> "modules/local/fastg2gfa/tests/main.nf.test";
	"modules/nf-core/blast/makeblastdb/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/phables/run/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/fetchngs/sra_fastq_ftp/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/nf-core/untar/main.nf" [label="modules/
nf-core/
untar/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/untar/main.nf" -> "modules/nf-core/untar/tests/main.nf.test";
	"modules/nf-core/untar/main.nf" -> "modules/nf-core/sratools/fasterqdump/tests/main.nf.test";
	"modules/nf-core/megahit/main.nf" [label="modules/
nf-core/
megahit/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/megahit/main.nf" -> "modules/nf-core/megahit/tests/main.nf.test";
	"modules/nf-core/megahit/main.nf" -> "workflows/phageannotator/main.nf";
	"modules/local/filtersequences/main.nf" [label="modules/
local/
filtersequences/
main.nf", shape="box3d", fillcolor="1", style="rounded,filled"]
	"modules/local/filtersequences/main.nf" -> "workflows/phageannotator/main.nf";
	"workflows/phageannotator/fastq_readassembly_fasta/main.nf" [label="workflows/
phageannotator/
fastq_readassembly_fasta/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"workflows/phageannotator/fastq_readassembly_fasta/main.nf" -> "workflows/phageannotator/fastq_readassembly_fasta/tests/main.nf.test";
	"modules/nf-core/gunzip/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/nf-core/gunzip/tests/main.nf.test.snap" -> "modules/nf-core/gunzip/tests/main.nf.test";
	"modules/local/nucleotidestats/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/nucleotidestats/tests/main.nf.test.snap" -> "modules/local/nucleotidestats/tests/main.nf.test";
	"modules/nf-core/bowtie2/build/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/viromeqc/viromeqc/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/viromeqc/viromeqc/tests/main.nf.test.snap" -> "modules/local/viromeqc/viromeqc/tests/main.nf.test";
	"modules/nf-core/checkv/updatedatabase/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/nucleotidestats/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/seqkit/split/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/seqkit/split/tests/main.nf.test.snap" -> "modules/local/seqkit/split/tests/main.nf.test";
	"subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test" [label="main.workflow.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/seqkit/split/tests/main.nf.test" [label="main.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/local/checkv/anicalc/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/local/checkv/anicalc/tests/main.nf.test.snap" -> "modules/local/checkv/anicalc/tests/main.nf.test";
	"modules/nf-core/fastp/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/nf-core/fastp/tests/main.nf.test.snap" -> "modules/nf-core/fastp/tests/main.nf.test";
	"subworkflows/local/fastqgfa_virusextension_phables/main.nf" [label="subworkflows/
local/
fastqgfa_virusextension_phables/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"subworkflows/local/fastqgfa_virusextension_phables/main.nf" -> "subworkflows/local/fastqgfa_virusextension_phables/tests/main.nf.test";
	"subworkflows/local/fastqgfa_virusextension_phables/main.nf" -> "workflows/phageannotator/main.nf";
	"subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test" [label="main.workflow.nf.test", fillcolor="2", style="rounded,filled"]
	"modules/nf-core/bacphlip/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/nf-core/bacphlip/tests/main.nf.test.snap" -> "modules/nf-core/bacphlip/tests/main.nf.test";
	"subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test.snap" -> "subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test";
	"modules/local/phables/install/main.nf" [label="modules/
local/
phables/
install/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/phables/install/main.nf" -> "subworkflows/local/fastqgfa_virusextension_phables/main.nf";
	"modules/local/phables/install/main.nf" -> "subworkflows/local/fastqgfa_virusextension_phables/tests/main.nf.test";
	"modules/local/phables/install/main.nf" -> "modules/local/phables/run/tests/main.nf.test";
	"modules/local/phables/install/main.nf" -> "modules/local/phables/install/tests/main.nf.test";
	"modules/nf-core/megahit/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/nf-core/megahit/tests/main.nf.test.snap" -> "modules/nf-core/megahit/tests/main.nf.test";
	"modules/local/checkv/anicalc/main.nf" [label="modules/
local/
checkv/
anicalc/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/checkv/anicalc/main.nf" -> "subworkflows/local/fasta_anicluster_blast/main.nf";
	"modules/local/checkv/anicalc/main.nf" -> "modules/local/checkv/anicalc/tests/main.nf.test";
	"modules/local/fetchngs/sra_runinfo_to_ftp/main.nf" [label="modules/
local/
fetchngs/
sra_runinfo_to_ftp/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/fetchngs/sra_runinfo_to_ftp/main.nf" -> "subworkflows/local/csv_sradownload_fetchngs/main.nf";
	"modules/local/fetchngs/sra_runinfo_to_ftp/main.nf" -> "modules/local/fetchngs/sra_runinfo_to_ftp/tests/main.nf.test";
	"modules/local/checkv/aniclust/main.nf" [label="modules/
local/
checkv/
aniclust/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/checkv/aniclust/main.nf" -> "subworkflows/local/fasta_anicluster_blast/main.nf";
	"modules/local/checkv/aniclust/main.nf" -> "modules/local/checkv/aniclust/tests/main.nf.test";
	"modules/nf-core/blast/blastn/tests/main.nf.test.snap" [label="Snapshot", shape="cylinder"]
	"modules/nf-core/blast/blastn/tests/main.nf.test.snap" -> "modules/nf-core/blast/blastn/tests/main.nf.test";
	"modules/nf-core/bacphlip/main.nf" [label="modules/
nf-core/
bacphlip/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/nf-core/bacphlip/main.nf" -> "modules/nf-core/bacphlip/tests/main.nf.test";
	"modules/nf-core/bacphlip/main.nf" -> "workflows/phageannotator/main.nf";
	"modules/local/viromeqc/viromeqc/main.nf" [label="modules/
local/
viromeqc/
viromeqc/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/viromeqc/viromeqc/main.nf" -> "modules/local/viromeqc/viromeqc/tests/main.nf.test";
	"modules/local/viromeqc/viromeqc/main.nf" -> "subworkflows/local/fastq_virusenrichment_viromeqc/main.nf";
	"subworkflows/nf-core/utils_nfcore_pipeline/main.nf" [label="subworkflows/
nf-core/
utils_nfcore_pipeline/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"subworkflows/nf-core/utils_nfcore_pipeline/main.nf" -> "subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test";
	"subworkflows/nf-core/utils_nfcore_pipeline/main.nf" -> "subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test";
	"subworkflows/nf-core/utils_nfcore_pipeline/main.nf" -> "subworkflows/local/utils_nfcore_phageannotator_pipeline/main.nf";
	"subworkflows/nf-core/utils_nfcore_pipeline/main.nf" -> "main.nf";
	"subworkflows/nf-core/utils_nfcore_pipeline/main.nf" -> "workflows/phageannotator/main.nf";
	"modules/local/plass/penguin/main.nf" [label="modules/
local/
plass/
penguin/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"modules/local/plass/penguin/main.nf" -> "modules/local/plass/penguin/tests/main.nf.test";
	"modules/local/plass/penguin/main.nf" -> "workflows/phageannotator/main.nf";
	"subworkflows/local/fastqfasta_provirusactivity_propagate/main.nf" [label="subworkflows/
local/
fastqfasta_provirusactivity_propagate/
main.nf", shape="box3d", fillcolor="3", style="rounded,filled"]
	"subworkflows/local/fastqfasta_provirusactivity_propagate/main.nf" -> "subworkflows/local/fastqfasta_provirusactivity_propagate/tests/main.nf.test";
}