Merge pull request #655 from Health-Informatics-UoN/devel

Merge dev to prod 2.0.14

.github/labeler.yml

@@ -0,0 +1,26 @@
+"Area: Migrations":
+  - 'app/api/mapping/migrations/*'
+
+dependencies:
+  - 'app/react-client-app/package.json'
+  - 'app/react-client-app/package-lock.json'
+  - 'poetry.lock'
+  - 'pyproject.toml'
+  - 'app/workers/poetry.lock'
+  - 'app/workers/pyproject.toml'
+  - 'app/api/poetry.lock'
+  - 'app/api/pyproject.toml'
+
+"Area: CI":
+  - '.github/**/*'
+
+"Area: Backend":
+  - 'app/api/**'
+  - 'lib/Data/**'
+  - 'lib/Monitor.Shared/**'
+
+"Area: Frontend":
+  - 'app/react-client-app/**'
+
+"Area: Workers":
+  - 'app/workers/**'

.github/workflows/ci.yml

@@ -63,7 +63,7 @@ jobs:
 
 
      - name: Build the docker image
-       run: docker build -f Dockerfile.deploy -t ccom-build:latest .
+       run: docker build -f app/Dockerfile.deploy -t ccom-build:latest .
      - name: Run the docker image
        run: |
          #startup the stack

.github/workflows/deploy.yml

@@ -0,0 +1,189 @@
+name: Build and Deploy to Azure - ccom
+
+on:
+  push:
+    branches:
+      - master
+  workflow_dispatch:
+
+env:
+  AZURE_FUNCTIONAPP_PACKAGE_PATH: './app/workers'
+  PYTHON_VERSION: '3.8'
+
+jobs:
+  build-and-publish-workers:
+    runs-on: ubuntu-latest
+    steps:
+    - name: 'Checkout GitHub Action'
+      uses: actions/checkout@v4
+
+    - name: Setup Python ${{ env.PYTHON_VERSION }} Environment
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ env.PYTHON_VERSION }}
+
+    - name: 'Install Poetry'
+      uses: snok/install-poetry@v1
+
+    - name: 'Resolve Project Dependencies Using Poetry'
+      run: |
+        pushd './${{ env.AZURE_FUNCTIONAPP_PACKAGE_PATH }}'
+        poetry config virtualenvs.create false
+        poetry export --format requirements.txt --output requirements.txt
+        popd
+      shell: bash
+
+    - name: 'Install Dependencies Using Pip'
+      shell: bash
+      run: |
+        pushd './${{ env.AZURE_FUNCTIONAPP_PACKAGE_PATH }}'
+        python -m pip install --upgrade pip
+        pip install -r requirements.txt --target=".python_packages/lib/site-packages"
+        popd
+
+    - name: Upload artifact for deployment job
+      uses: actions/upload-artifact@v4
+      with:
+        name: functionsapp
+        path: ${{ env.AZURE_FUNCTIONAPP_PACKAGE_PATH }}
+
+  build-and-publish-web:
+    runs-on: 'ubuntu-latest'
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Log in to registry
+        uses: docker/login-action@v3
+        with:
+          registry: ccomreg.azurecr.io
+          username: ${{ secrets.REGISTRY_USERNAME_DEV }}
+          password: ${{ secrets.REGISTRY_PASSWORD_DEV }}
+
+      - name: Build and push container image to registry
+        uses: docker/build-push-action@v5
+        with:
+          push: true
+          tags: ccomreg.azurecr.io/${{ secrets.REGISTRY_USERNAME_DEV }}/latest:${{ github.sha }}
+          file: ./app/Dockerfile.deploy
+
+  # Deploy Workers Dev
+  deploy-workers-dev:
+    runs-on: ubuntu-latest
+    needs: [build-and-publish-workers, build-and-publish-web]
+    environment: dev
+
+    steps:
+      - name: Download artifact from build job
+        uses: actions/download-artifact@v4
+        with:
+          path: functionsapp
+          name: functionsapp
+
+      - name: 'Run Azure Functions Action'
+        uses: Azure/[email protected]
+        id: fa
+        with:
+          app-name: 'ccom-funcs-dev'
+          slot-name: 'production'
+          package: ${{ github.workspace }}/functionsapp
+          publish-profile: ${{ env.AZURE_FUNCAPP_PUBLISH_PROFILE  }}
+
+  # Deploy Web App Dev
+  deploy-web-dev:
+    runs-on: ubuntu-latest
+    needs: [build-and-publish-web, deploy-workers-dev]
+    environment:
+      name: 'dev'
+      url: ${{ steps.deploy-web-dev.outputs.webapp-url }}
+
+    steps:
+      - name: Deploy to Azure Web App
+        id: deploy-to-webapp
+        uses: azure/webapps-deploy@v2
+        with:
+          app-name: 'ccom-dev'
+          publish-profile: ${{ env.AZURE_WEBAPP_PUBLISH_PROFILE }}
+          images: 'ccomreg.azurecr.io/${{ secrets.REGISTRY_USERNAME_DEV }}/latest:${{ github.sha }}'
+
+  # Deploy Workers Test
+  deploy-workers-test:
+    runs-on: ubuntu-latest
+    needs: deploy-workers-dev
+    environment: test
+
+    steps:
+      - name: Download artifact from build job
+        uses: actions/download-artifact@v4
+        with:
+          path: functionsapp
+          name: functionsapp
+
+      - name: 'Run Azure Functions Action'
+        uses: Azure/[email protected]
+        id: fa
+        with:
+          app-name: 'ccom-funcs-test'
+          slot-name: 'production'
+          package: ${{ github.workspace }}/functionsapp
+          publish-profile: ${{ env.AZURE_FUNCAPP_PUBLISH_PROFILE  }}
+
+  # Deploy Web App Test
+  deploy-web-test:
+    runs-on: ubuntu-latest
+    needs: [deploy-web-dev, deploy-workers-test]
+    environment:
+      name: 'test'
+      url: ${{ steps.deploy-to-webapp.outputs.webapp-url }}
+
+    steps:
+      - name: Deploy to Azure Web App
+        id: deploy-to-webapp
+        uses: azure/webapps-deploy@v2
+        with:
+          app-name: 'ccom-test'
+          publish-profile: ${{ env.AZURE_WEBAPP_PUBLISH_PROFILE }}
+          images: 'ccomreg.azurecr.io/${{ secrets.REGISTRY_USERNAME_DEV }}/latest:${{ github.sha }}'
+
+  # Deploy Workers Production
+  deploy-workers-production:
+    runs-on: ubuntu-latest
+    needs: deploy-workers-test
+    environment: production
+
+    steps:
+      - name: Download artifact from build job
+        uses: actions/download-artifact@v4
+        with:
+          path: functionsapp
+          name: functionsapp
+
+      - name: 'Run Azure Functions Action'
+        uses: Azure/[email protected]
+        id: fa
+        with:
+          app-name: 'ccom-funcs-prod'
+          slot-name: 'production'
+          package: ${{ github.workspace }}/functionsapp
+          publish-profile: ${{ env.AZURE_FUNCAPP_PUBLISH_PROFILE  }}
+
+  # Deploy Web App Production
+  deploy-web-production:
+    runs-on: ubuntu-latest
+    needs: [deploy-web-test, deploy-workers-production]
+    environment:
+      name: 'production'
+      url: ${{ steps.deploy-to-webapp.outputs.webapp-url }}
+
+    steps:
+      - name: Deploy to Azure Web App
+        id: deploy-to-webapp
+        uses: azure/webapps-deploy@v2
+        with:
+          app-name: 'ccom'
+          slot-name: 'production'
+          publish-profile: ${{ env.AZURE_WEBAPP_PUBLISH_PROFILE }}
+          images: 'ccomreg.azurecr.io/${{ secrets.REGISTRY_USERNAME_DEV }}/latest:${{ github.sha }}'

.github/workflows/label.yml

@@ -0,0 +1,22 @@
+# This workflow will triage pull requests and apply a label based on the
+# paths that are modified in the pull request.
+#
+# To use this workflow, you will need to set up a .github/labeler.yml
+# file with configuration.  For more information, see:
+# https://github.com/actions/labeler
+
+name: Labeler
+on: [pull_request]
+
+jobs:
+  label:
+
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      pull-requests: write
+
+    steps:
+    - uses: actions/labeler@v4
+      with:
+        repo-token: "${{ secrets.GITHUB_TOKEN }}"