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3 changes: 2 additions & 1 deletion IG_BUILDS.md
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[ig/pull/90_FROM_ShahimEssaid_core-ig_pr-demo_TO_master](https://phenopackets.github.io/core-ig/ig/pull/90_FROM_ShahimEssaid_core-ig_pr-demo_TO_master/index.html?version=25d92694c4e5f3a3fabb5212aff37a367b556479)
[ig/pull/90_FROM_ShahimEssaid_core-ig_pr-demo_TO_master_MERGED](https://phenopackets.github.io/core-ig/ig/pull/90_FROM_ShahimEssaid_core-ig_pr-demo_TO_master_MERGED/index.html?version=0074a55ee17c46dacd8c9996e0733e537f8a951d)
[ig/pull/91_FROM_mabeckwith_core-ig_test_TO_master](https://phenopackets.github.io/core-ig/ig/pull/91_FROM_mabeckwith_core-ig_test_TO_master/index.html?version=02f3adb7053903034c198de03badfe040d8d2108)
[ig/pull/92_FROM_masnick_core-ig_patch-1_TO_master](https://phenopackets.github.io/core-ig/ig/pull/92_FROM_masnick_core-ig_patch-1_TO_master/index.html?version=0c92b8985fced75dfc78bdd6978733e2c0bea676)
[ig/pull/92_FROM_masnick_core-ig_patch-1_TO_master](https://phenopackets.github.io/phenomics-exchange-ig/ig/pull/92_FROM_masnick_core-ig_patch-1_TO_master/index.html?version=0c92b8985fced75dfc78bdd6978733e2c0bea676)
[ig/pull/92_FROM_masnick_core-ig_patch-1_TO_master_MERGED](https://phenopackets.github.io/phenomics-exchange-ig/ig/pull/92_FROM_masnick_core-ig_patch-1_TO_master_MERGED/index.html?version=c074acd313bfe79aadf8fa1452ebd78d631c37fb)
12 changes: 6 additions & 6 deletions ..._masnick_core-ig_patch-1_TO_master/Bundle-PhenopacketsBundleExample01.change.history.html
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<html xml:lang="en" xmlns="http://www.w3.org/1999/xhtml" lang="en">
<head>
<meta content="text/html;charset=utf-8" http-equiv="Content-Type"/>
<title>HL7.FHIR.US.GA4GH.PHENOPACKET\ - FHIR v4.0.1</title>
<title> - GA4GH Phenopacket (version 2) FHIR Implementation Guide v0.1.0</title>

<meta name="viewport" content="width=device-width, initial-scale=1.0"/>
<meta name="author" content="http://hl7.org/fhir"/>
Expand All @@ -33,10 +33,10 @@
<![endif]-->

<!-- Favicons -->
<link rel="apple-touch-icon-precomposed" sizes="144x144" href="assets/ico/apple-touch-icon-144-precomposed.png"/>
<link rel="apple-touch-icon-precomposed" sizes="114x114" href="assets/ico/apple-touch-icon-114-precomposed.png"/>
<link rel="apple-touch-icon-precomposed" sizes="72x72" href="assets/ico/apple-touch-icon-72-precomposed.png"/>
<link rel="apple-touch-icon-precomposed" href="assets/ico/apple-touch-icon-57-precomposed.png"/>
<link rel="fhir-logo" sizes="144x144" href="assets/ico/icon-fhir-144.png"/>
<link rel="fhir-logo" sizes="114x114" href="assets/ico/icon-fhir-114.png"/>
<link rel="fhir-logo" sizes="72x72" href="assets/ico/icon-fhir-72.png"/>
<link rel="fhir-logo" href="assets/ico/icon-fhir-57.png"/>
<link rel="shortcut icon" href="assets/ico/favicon.png"/>
</head>
<body onload="document.body.style.opacity='1'">
Expand Down Expand Up @@ -289,7 +289,7 @@ <h2 id="root">: Bundle/PhenopacketsBundleExample01 - Change History</h2>

<div class="inner-wrapper">
<p>
IG &#169; 2021+ <a style="color:var(--footer-hyperlink-text-color)" href="https://www.ga4gh.org/work_stream/clinical-phenotypic-data-capture-2/">Global Alliance for Genomics and Health - Clinical and Phenotypic Data Capture Work Stream</a>. Package hl7.fhir.us.ga4gh.phenopacket#0.1.0 based on <a style="color: var(--footer-hyperlink-text-color)" href="http://hl7.org/fhir/R4/">FHIR 4.0.1</a>. Generated <span title="Tue, Apr 18, 2023 17:38+0000">2023-04-18</span>
IG &#169; 2021+ <a style="color:var(--footer-hyperlink-text-color)" href="https://www.ga4gh.org/work_stream/clinical-phenotypic-data-capture-2/">Global Alliance for Genomics and Health - Clinical and Phenotypic Data Capture Work Stream</a>. Package hl7.fhir.us.ga4gh.phenopacket#0.1.0 based on <a style="color: var(--footer-hyperlink-text-color)" href="http://hl7.org/fhir/R4/">FHIR 4.0.1</a>. Generated <span title="Mon, Oct 2, 2023 17:27+0000">2023-10-02</span>
<br/>
<span style="color: var(--footer-highlight-text-color)">
Links: <a style="color: var(--footer-hyperlink-text-color)" href="toc.html">Table of Contents</a> |
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28 changes: 8 additions & 20 deletions ig/pull/92_FROM_masnick_core-ig_patch-1_TO_master/Bundle-PhenopacketsBundleExample01.html
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14 changes: 7 additions & 7 deletions ig/pull/92_FROM_masnick_core-ig_patch-1_TO_master/Bundle-PhenopacketsBundleExample01.json
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14 changes: 7 additions & 7 deletions ig/pull/92_FROM_masnick_core-ig_patch-1_TO_master/Bundle-PhenopacketsBundleExample01.ttl
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38 changes: 13 additions & 25 deletions ...ull/92_FROM_masnick_core-ig_patch-1_TO_master/Bundle-PhenopacketsBundleExample01.ttl.html
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14 changes: 7 additions & 7 deletions ig/pull/92_FROM_masnick_core-ig_patch-1_TO_master/Bundle-PhenopacketsBundleExample01.xml
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27 changes: 20 additions & 7 deletions ig/pull/92_FROM_masnick_core-ig_patch-1_TO_master/CodeSystem-HtsFormat-testing.html
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<html xml:lang="en" xmlns="http://www.w3.org/1999/xhtml" lang="en">
<head>
<meta content="text/html;charset=utf-8" http-equiv="Content-Type"/>
<title>HL7.FHIR.US.GA4GH.PHENOPACKET\HTS Format - Testing - FHIR v4.0.1</title>
<title>HTS Format - Testing - GA4GH Phenopacket (version 2) FHIR Implementation Guide v0.1.0</title>

<meta name="viewport" content="width=device-width, initial-scale=1.0"/>
<meta name="author" content="http://hl7.org/fhir"/>
Expand All @@ -29,10 +29,10 @@
<![endif]-->

<!-- Favicons -->
<link rel="apple-touch-icon-precomposed" sizes="144x144" href="assets/ico/apple-touch-icon-144-precomposed.png"/>
<link rel="apple-touch-icon-precomposed" sizes="114x114" href="assets/ico/apple-touch-icon-114-precomposed.png"/>
<link rel="apple-touch-icon-precomposed" sizes="72x72" href="assets/ico/apple-touch-icon-72-precomposed.png"/>
<link rel="apple-touch-icon-precomposed" href="assets/ico/apple-touch-icon-57-precomposed.png"/>
<link rel="fhir-logo" sizes="144x144" href="assets/ico/icon-fhir-144.png"/>
<link rel="fhir-logo" sizes="114x114" href="assets/ico/icon-fhir-114.png"/>
<link rel="fhir-logo" sizes="72x72" href="assets/ico/icon-fhir-72.png"/>
<link rel="fhir-logo" href="assets/ico/icon-fhir-57.png"/>
<link rel="shortcut icon" href="assets/ico/favicon.png"/>
</head>
<body onload="document.body.style.opacity='1'">
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</h2>


<table class="colsi">
<tr>

Expand All @@ -254,7 +255,19 @@ <h2 id="root">CodeSystem: HTS Format - Testing



<p><b>No TestScripts are currently available for the CodeSystem.</b></p>
<!-- insert intro if present -->




<h3>Test Plans</h3>

<p><b>No test plans are currently available for the CodeSystem.</b></p>


<h3>Test Scripts</h3>

<p><b>No test scripts are currently available for the CodeSystem.</b></p>


<!-- insert notes if present -->
Expand Down Expand Up @@ -286,7 +299,7 @@ <h2 id="root">CodeSystem: HTS Format - Testing

<div class="inner-wrapper">
<p>
IG &#169; 2021+ <a style="color:var(--footer-hyperlink-text-color)" href="https://www.ga4gh.org/work_stream/clinical-phenotypic-data-capture-2/">Global Alliance for Genomics and Health - Clinical and Phenotypic Data Capture Work Stream</a>. Package hl7.fhir.us.ga4gh.phenopacket#0.1.0 based on <a style="color: var(--footer-hyperlink-text-color)" href="http://hl7.org/fhir/R4/">FHIR 4.0.1</a>. Generated <span title="Tue, Apr 18, 2023 17:38+0000">2023-04-18</span>
IG &#169; 2021+ <a style="color:var(--footer-hyperlink-text-color)" href="https://www.ga4gh.org/work_stream/clinical-phenotypic-data-capture-2/">Global Alliance for Genomics and Health - Clinical and Phenotypic Data Capture Work Stream</a>. Package hl7.fhir.us.ga4gh.phenopacket#0.1.0 based on <a style="color: var(--footer-hyperlink-text-color)" href="http://hl7.org/fhir/R4/">FHIR 4.0.1</a>. Generated <span title="Mon, Oct 2, 2023 17:27+0000">2023-10-02</span>
<br/>
<span style="color: var(--footer-highlight-text-color)">
Links: <a style="color: var(--footer-hyperlink-text-color)" href="toc.html">Table of Contents</a> |
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12 changes: 6 additions & 6 deletions ig/pull/92_FROM_masnick_core-ig_patch-1_TO_master/CodeSystem-HtsFormat.change.history.html
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<html xml:lang="en" xmlns="http://www.w3.org/1999/xhtml" lang="en">
<head>
<meta content="text/html;charset=utf-8" http-equiv="Content-Type"/>
<title>HL7.FHIR.US.GA4GH.PHENOPACKET\ - FHIR v4.0.1</title>
<title> - GA4GH Phenopacket (version 2) FHIR Implementation Guide v0.1.0</title>

<meta name="viewport" content="width=device-width, initial-scale=1.0"/>
<meta name="author" content="http://hl7.org/fhir"/>
Expand All @@ -33,10 +33,10 @@
<![endif]-->

<!-- Favicons -->
<link rel="apple-touch-icon-precomposed" sizes="144x144" href="assets/ico/apple-touch-icon-144-precomposed.png"/>
<link rel="apple-touch-icon-precomposed" sizes="114x114" href="assets/ico/apple-touch-icon-114-precomposed.png"/>
<link rel="apple-touch-icon-precomposed" sizes="72x72" href="assets/ico/apple-touch-icon-72-precomposed.png"/>
<link rel="apple-touch-icon-precomposed" href="assets/ico/apple-touch-icon-57-precomposed.png"/>
<link rel="fhir-logo" sizes="144x144" href="assets/ico/icon-fhir-144.png"/>
<link rel="fhir-logo" sizes="114x114" href="assets/ico/icon-fhir-114.png"/>
<link rel="fhir-logo" sizes="72x72" href="assets/ico/icon-fhir-72.png"/>
<link rel="fhir-logo" href="assets/ico/icon-fhir-57.png"/>
<link rel="shortcut icon" href="assets/ico/favicon.png"/>
</head>
<body onload="document.body.style.opacity='1'">
Expand Down Expand Up @@ -289,7 +289,7 @@ <h2 id="root">: HtsFormat - Change History</h2>

<div class="inner-wrapper">
<p>
IG &#169; 2021+ <a style="color:var(--footer-hyperlink-text-color)" href="https://www.ga4gh.org/work_stream/clinical-phenotypic-data-capture-2/">Global Alliance for Genomics and Health - Clinical and Phenotypic Data Capture Work Stream</a>. Package hl7.fhir.us.ga4gh.phenopacket#0.1.0 based on <a style="color: var(--footer-hyperlink-text-color)" href="http://hl7.org/fhir/R4/">FHIR 4.0.1</a>. Generated <span title="Tue, Apr 18, 2023 17:38+0000">2023-04-18</span>
IG &#169; 2021+ <a style="color:var(--footer-hyperlink-text-color)" href="https://www.ga4gh.org/work_stream/clinical-phenotypic-data-capture-2/">Global Alliance for Genomics and Health - Clinical and Phenotypic Data Capture Work Stream</a>. Package hl7.fhir.us.ga4gh.phenopacket#0.1.0 based on <a style="color: var(--footer-hyperlink-text-color)" href="http://hl7.org/fhir/R4/">FHIR 4.0.1</a>. Generated <span title="Mon, Oct 2, 2023 17:27+0000">2023-10-02</span>
<br/>
<span style="color: var(--footer-highlight-text-color)">
Links: <a style="color: var(--footer-hyperlink-text-color)" href="toc.html">Table of Contents</a> |
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16 changes: 8 additions & 8 deletions ig/pull/92_FROM_masnick_core-ig_patch-1_TO_master/CodeSystem-HtsFormat.html
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<html xml:lang="en" xmlns="http://www.w3.org/1999/xhtml" lang="en">
<head>
<meta content="text/html;charset=utf-8" http-equiv="Content-Type"/>
<title>HL7.FHIR.US.GA4GH.PHENOPACKET\HTS Format - FHIR v4.0.1</title>
<title>HTS Format - GA4GH Phenopacket (version 2) FHIR Implementation Guide v0.1.0</title>

<meta name="viewport" content="width=device-width, initial-scale=1.0"/>
<meta name="author" content="http://hl7.org/fhir"/>
Expand All @@ -29,10 +29,10 @@
<![endif]-->

<!-- Favicons -->
<link rel="apple-touch-icon-precomposed" sizes="144x144" href="assets/ico/apple-touch-icon-144-precomposed.png"/>
<link rel="apple-touch-icon-precomposed" sizes="114x114" href="assets/ico/apple-touch-icon-114-precomposed.png"/>
<link rel="apple-touch-icon-precomposed" sizes="72x72" href="assets/ico/apple-touch-icon-72-precomposed.png"/>
<link rel="apple-touch-icon-precomposed" href="assets/ico/apple-touch-icon-57-precomposed.png"/>
<link rel="fhir-logo" sizes="144x144" href="assets/ico/icon-fhir-144.png"/>
<link rel="fhir-logo" sizes="114x114" href="assets/ico/icon-fhir-114.png"/>
<link rel="fhir-logo" sizes="72x72" href="assets/ico/icon-fhir-72.png"/>
<link rel="fhir-logo" href="assets/ico/icon-fhir-57.png"/>
<link rel="shortcut icon" href="assets/ico/favicon.png"/>
</head>
<body onload="document.body.style.opacity='1'">
Expand Down Expand Up @@ -293,10 +293,10 @@ <h2 id="root">CodeSystem: HTS Format
</p>


<p>This CodeSystem is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)</p>
<ul><li>This CodeSystem is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)</li></ul>


<div xmlns="http://www.w3.org/1999/xhtml"><p>This code system <code>https://github.com/phenopackets/core-ig/CodeSystem/HtsFormat</code> defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style="white-space:nowrap">UNKNOWN<a name="HtsFormat-UNKNOWN"> </a></td><td>Unknown</td></tr><tr><td style="white-space:nowrap">SAM<a name="HtsFormat-SAM"> </a></td><td>SAM</td></tr><tr><td style="white-space:nowrap">BAM<a name="HtsFormat-BAM"> </a></td><td>BAM</td></tr><tr><td style="white-space:nowrap">CRAM<a name="HtsFormat-CRAM"> </a></td><td>CRAM</td></tr><tr><td style="white-space:nowrap">VCF<a name="HtsFormat-VCF"> </a></td><td>VCF</td></tr><tr><td style="white-space:nowrap">BCF<a name="HtsFormat-BCF"> </a></td><td>BCF</td></tr><tr><td style="white-space:nowrap">GVCF<a name="HtsFormat-GVCF"> </a></td><td>GVCF</td></tr></table></div>
<div xmlns="http://www.w3.org/1999/xhtml"><p>This code system <code>https://github.com/phenopackets/core-ig/CodeSystem/HtsFormat</code> defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style="white-space:nowrap">UNKNOWN<a name="HtsFormat-UNKNOWN"> </a></td><td>Unknown</td></tr><tr><td style="white-space:nowrap">SAM<a name="HtsFormat-SAM"> </a></td><td>SAM</td></tr><tr><td style="white-space:nowrap">BAM<a name="HtsFormat-BAM"> </a></td><td>BAM</td></tr><tr><td style="white-space:nowrap">CRAM<a name="HtsFormat-CRAM"> </a></td><td>CRAM</td></tr><tr><td style="white-space:nowrap">VCF<a name="HtsFormat-VCF"> </a></td><td>VCF</td></tr><tr><td style="white-space:nowrap">BCF<a name="HtsFormat-BCF"> </a></td><td>BCF</td></tr><tr><td style="white-space:nowrap">GVCF<a name="HtsFormat-GVCF"> </a></td><td>GVCF</td></tr></table></div>



Expand Down Expand Up @@ -329,7 +329,7 @@ <h2 id="root">CodeSystem: HTS Format

<div class="inner-wrapper">
<p>
IG &#169; 2021+ <a style="color:var(--footer-hyperlink-text-color)" href="https://www.ga4gh.org/work_stream/clinical-phenotypic-data-capture-2/">Global Alliance for Genomics and Health - Clinical and Phenotypic Data Capture Work Stream</a>. Package hl7.fhir.us.ga4gh.phenopacket#0.1.0 based on <a style="color: var(--footer-hyperlink-text-color)" href="http://hl7.org/fhir/R4/">FHIR 4.0.1</a>. Generated <span title="Tue, Apr 18, 2023 17:38+0000">2023-04-18</span>
IG &#169; 2021+ <a style="color:var(--footer-hyperlink-text-color)" href="https://www.ga4gh.org/work_stream/clinical-phenotypic-data-capture-2/">Global Alliance for Genomics and Health - Clinical and Phenotypic Data Capture Work Stream</a>. Package hl7.fhir.us.ga4gh.phenopacket#0.1.0 based on <a style="color: var(--footer-hyperlink-text-color)" href="http://hl7.org/fhir/R4/">FHIR 4.0.1</a>. Generated <span title="Mon, Oct 2, 2023 17:27+0000">2023-10-02</span>
<br/>
<span style="color: var(--footer-highlight-text-color)">
Links: <a style="color: var(--footer-hyperlink-text-color)" href="toc.html">Table of Contents</a> |
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2 changes: 1 addition & 1 deletion ig/pull/92_FROM_masnick_core-ig_patch-1_TO_master/CodeSystem-HtsFormat.json
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"id" : "HtsFormat",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p>This code system <code>https://github.com/phenopackets/core-ig/CodeSystem/HtsFormat</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">UNKNOWN<a name=\"HtsFormat-UNKNOWN\"> </a></td><td>Unknown</td></tr><tr><td style=\"white-space:nowrap\">SAM<a name=\"HtsFormat-SAM\"> </a></td><td>SAM</td></tr><tr><td style=\"white-space:nowrap\">BAM<a name=\"HtsFormat-BAM\"> </a></td><td>BAM</td></tr><tr><td style=\"white-space:nowrap\">CRAM<a name=\"HtsFormat-CRAM\"> </a></td><td>CRAM</td></tr><tr><td style=\"white-space:nowrap\">VCF<a name=\"HtsFormat-VCF\"> </a></td><td>VCF</td></tr><tr><td style=\"white-space:nowrap\">BCF<a name=\"HtsFormat-BCF\"> </a></td><td>BCF</td></tr><tr><td style=\"white-space:nowrap\">GVCF<a name=\"HtsFormat-GVCF\"> </a></td><td>GVCF</td></tr></table></div>"
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p>This code system <code>https://github.com/phenopackets/core-ig/CodeSystem/HtsFormat</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">UNKNOWN<a name=\"HtsFormat-UNKNOWN\"> </a></td><td>Unknown</td></tr><tr><td style=\"white-space:nowrap\">SAM<a name=\"HtsFormat-SAM\"> </a></td><td>SAM</td></tr><tr><td style=\"white-space:nowrap\">BAM<a name=\"HtsFormat-BAM\"> </a></td><td>BAM</td></tr><tr><td style=\"white-space:nowrap\">CRAM<a name=\"HtsFormat-CRAM\"> </a></td><td>CRAM</td></tr><tr><td style=\"white-space:nowrap\">VCF<a name=\"HtsFormat-VCF\"> </a></td><td>VCF</td></tr><tr><td style=\"white-space:nowrap\">BCF<a name=\"HtsFormat-BCF\"> </a></td><td>BCF</td></tr><tr><td style=\"white-space:nowrap\">GVCF<a name=\"HtsFormat-GVCF\"> </a></td><td>GVCF</td></tr></table></div>"
},
"url" : "https://github.com/phenopackets/core-ig/CodeSystem/HtsFormat",
"version" : "0.1.0",
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