Update README.md

README.md

@@ -57,6 +57,9 @@ Clair3 is published at [Nature Computational Science](https://rdcu.be/c1TPa), an
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 ## Latest Updates
+*v1.0.1 (Apr 24, 2023)* : 1. Bumped up "WhatsHap" version to 1.7, `whatshap haplotag` step is ~15% faster.([#193](https://github.com/HKU-BAL/Clair3/issues/193)). 2. Fixed PL issue when alternative base is N ([#191](https://github.com/HKU-BAL/Clair3/issues/191), contributor @[
+Dennis Hendriksen](https://github.com/dennishendriksen)).
+
 *v1.0.0 (Mar 6, 2023)* : 1. Added Clair3 version in VCF header([#141](https://github.com/HKU-BAL/Clair3/issues/141)). 2. Fixed the Numpy int issue using the latest numpy version ([#165](https://github.com/HKU-BAL/Clair3/issues/165), contributor @[Aaron Tyler](https://github.com/AJTDaedalus)). 3. Coverted all IUPAC bases to 'N' in both VCF and GVCF output, use `--keep_iupac_bases` to keep the IUPAC bases ([#153](https://github.com/HKU-BAL/Clair3/issues/153)). 4. Added `--use_longphase_for_intermediate_phasing`, `--use_whatshap_for_intermediate_phasing`, `--use_longphase_for_final_output_phasing`, `--use_whatshap_for_final_output_phasing`, `--use_whatshap_for_final_output_haplotagging` options to support intermediate phasing and final VCF phasing(using WhatsHap or LongPhase) ([#164](https://github.com/HKU-BAL/Clair3/issues/164)). 5. Fixed shell issue in docker host user mode ([#175](https://github.com/HKU-BAL/Clair3/issues/175)).
 
 *v0.1-r12 (Aug 19)* : 1. CRAM input is supported ([#117](https://github.com/HKU-BAL/Clair3/issues/117)). 2. Bumped up dependencies' version to "Python 3.9" ([#96](https://github.com/HKU-BAL/Clair3/issues/96)), "TensorFlow 2.8", "Samtools 1.15.1", "WhatsHap 1.4". 3. VCF DP tag now shows raw coverage for both pileup and full-alignment calls (before r12, sub-sampled coverage was shown for pileup calls if average DP > 144, ([#128](https://github.com/HKU-BAL/Clair3/issues/128)). 4. Fixed Illumina representation unification out-of-range error in training ([#110](https://github.com/HKU-BAL/Clair3/issues/110)). 5. Updated package longphase from v1.0 to v1.3 (on Sept 27th, included in all installation options labeled v0.1-r12).