[Snyk] Security upgrade ray from 1.6.0 to 2.11.0 #1423

	name: extract-preprints

	on:
	schedule:
	# Run at 01:30 every day
	- cron: '30 1 * * *'
	push:
	branches: [ master ]
	pull_request:
	branches: [ master ]
	workflow_dispatch:

	jobs:
	extract-papers:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout
	uses: actions/checkout@v2
	- name: Set up Python 3.8
	uses: actions/setup-python@v1
	with:
	python-version: 3.8
	- name: Install Python dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install flake8 pytest
	if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
	- name: Extract COVID-19 Preprints
	env:
	PASSPHRASE: ${{ secrets.PASSPHRASE }}
	run: \|
	mkdir $HOME/secrets
	gpg --quiet --batch --yes --decrypt --passphrase="$PASSPHRASE" --output $HOME/secrets/contacts.csv data/contacts.csv.gpg
	python3 preprint-extractor.py
	- name: Commit extracts to master branch
	uses: stefanzweifel/[email protected]
	with:
	commit_message: Commit new papers and preprints
	branch: ${{ github.head_ref }}
	commit_user_name: Susheel Varma
	commit_user_email: [email protected]
	commit_author: Susheel Varma <[email protected]>
	- name: Commit extracts to gh-pages branch
	uses: stefanzweifel/[email protected]
	with:
	commit_message: Commit new papers and preprints
	branch: gh-pages
	commit_user_name: Susheel Varma
	commit_user_email: [email protected]
	commit_author: Susheel Varma <[email protected]>

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