revert herediclassify install

tools/script/install_herediclass.sh

@@ -39,45 +39,45 @@ cd $path
 variant_classification_path=$path/$foldername
 
 cd $variant_classification_path
-#wget https://www.python.org/ftp/python/3.10.13/Python-3.10.13.tgz
-#tar -zxvf Python-3.10.13.tgz
-#cd Python-3.10.13
-#mkdir -p .localpython
-#./configure --prefix=$variant_classification_path/.localpython
-#make
-#make install
-
-#cd ..
-#cd .localpython/bin
-#./pip3 install virtualenv
-
-
-#cd ../..
-#.localpython/bin/python3.10 -m venv .venv
-#source .venv/bin/activate
-#pip install --upgrade pip
-#pip install wheel
-#pip install setuptools
-#python3 -m pip install --upgrade setuptools wheel
-#pip install -r requirements.txt
-##pip install pyyaml
-##pip install cyvcf2
-##pip install biopython
-##pip install pyensembl==2.2.9
-##pip install hgvs
-##pip install pybedtools
-##pip install openpyxl
-##pip install jsonschema
-##pip install pandas
-##pip install fastapi
-##pip install uvicorn
-
-#cd $variant_classification_path
-#bash $variant_classification_path/install_dependencies/install_pyensembl.sh -v 110
-
-#sed -r -i "s:/variant_classification::g" $variant_classification_path/install_dependencies/download_data.sh
-
-#bash $variant_classification_path/install_dependencies/download_data.sh -p $variant_classification_path
+wget https://www.python.org/ftp/python/3.10.13/Python-3.10.13.tgz
+tar -zxvf Python-3.10.13.tgz
+cd Python-3.10.13
+mkdir -p .localpython
+./configure --prefix=$variant_classification_path/.localpython
+make
+make install
+
+cd ..
+cd .localpython/bin
+./pip3 install virtualenv
+
+
+cd ../..
+.localpython/bin/python3.10 -m venv .venv
+source .venv/bin/activate
+pip install --upgrade pip
+pip install wheel
+pip install setuptools
+python3 -m pip install --upgrade setuptools wheel
+pip install -r requirements.txt
+#pip install pyyaml
+#pip install cyvcf2
+#pip install biopython
+#pip install pyensembl==2.2.9
+#pip install hgvs
+#pip install pybedtools
+#pip install openpyxl
+#pip install jsonschema
+#pip install pandas
+#pip install fastapi
+#pip install uvicorn
+
+cd $variant_classification_path
+bash $variant_classification_path/install_dependencies/install_pyensembl.sh -v 110
+
+sed -r -i "s:/variant_classification::g" $variant_classification_path/install_dependencies/download_data.sh
+
+bash $variant_classification_path/install_dependencies/download_data.sh -p $variant_classification_path
 
 
 cd databases/Clinvar