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update download data
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MarvinDo committed Nov 20, 2023
1 parent 8369812 commit e36cb0e
Showing 1 changed file with 8 additions and 8 deletions.
16 changes: 8 additions & 8 deletions data/download_data.sh
Original file line number Diff line number Diff line change
Expand Up @@ -443,14 +443,14 @@ wget https://www.omim.org/static/omim/data/mim2gene.txt
cd $dbs
mkdir -p BayesDEL
cd BayesDEL


wget https://dbnsfp.s3.amazonaws.com/dbNSFP4.4a.zip
unzip dbNSFP4.4a.zip -d dbNSFP4.4a
mv dbNSFP4.4a dbNSFP4.4a_full
mkdir -p dbNSFP4.4a
mv dbNSFP4.4a_full/*variant* dbNSFP4.4a
rm -r dbNSFP4.4a_full
#
#
#wget https://dbnsfp.s3.amazonaws.com/dbNSFP4.4a.zip
#unzip dbNSFP4.4a.zip -d dbNSFP4.4a
#mv dbNSFP4.4a dbNSFP4.4a_full
#mkdir -p dbNSFP4.4a
#mv dbNSFP4.4a_full/*variant* dbNSFP4.4a
#rm -r dbNSFP4.4a_full

bayesdel_file=bayesdel_4.4
python3 $tools/db_converter_bayesdel.py -i dbNSFP4.4a -o $bayesdel_file.vcf
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