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fixed a path
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MarvinDo committed Jan 10, 2024
1 parent e59c187 commit ce80a09
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/common/paths.py
Original file line number Diff line number Diff line change
Expand Up @@ -223,7 +223,7 @@ def joinpaths(path, *paths):


#tools
vep_path = joinpaths(toolsdir, "ensembl-vep-release-107.0")
vep_path = joinpaths(toolsdir, "ensembl-vep")
vep_cache_dir = joinpaths(vep_path, "data/cache")
os.environ['PERL5LIB'] = vep_path + "/Bio/:" + vep_path + "/cpan/lib/perl5/:" + os.environ.get('PERL5LIB', '')
#ngs_bits_path = "/mnt/storage1/share/opt/ngs-bits-hg38-2022_04-70-g53bce65c/"
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