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revert heredicare annotation to old classification comment
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MarvinDo committed May 31, 2024
1 parent 1179dd6 commit bcf8ab9
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/annotation_service/annotation_jobs/heredicare_job.py
Original file line number Diff line number Diff line change
Expand Up @@ -71,7 +71,7 @@ def save_to_db(self, info, variant_id, conn):
n_fam = heredicare_variant["N_FAM"]
n_pat = heredicare_variant["N_PAT"]
consensus_class = heredicare_variant["PATH_TF"] if heredicare_variant["PATH_TF"] != "-1" else None
comment = heredicare_variant["VUSTF_21"] if heredicare_variant["VUSTF_21"] is not None else ''
comment = heredicare_variant["VUSTF_15"] if heredicare_variant["VUSTF_15"] is not None else ''
comment = comment.strip()
comment = comment if comment != '' else None
classification_date = heredicare_variant["VUSTF_DATUM"] if heredicare_variant["VUSTF_DATUM"] != '' else None
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