update update database

GC-HBOC · Jan 16, 2024 · 8fda231 · 8fda231
1 parent 17a0f86
commit 8fda231
Showing 1 changed file with 57 additions and 57 deletions.
diff --git a/resources/backups/database_dumper/update_database_4.sql b/resources/backups/database_dumper/update_database_4.sql
@@ -1,62 +1,62 @@
-
-CREATE TABLE `HerediVar`.`sv_variant` (
-  `id` INT UNSIGNED NOT NULL AUTO_INCREMENT,
-  `chrom` ENUM('chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrMT') NOT NULL,
-  `start` INT NOT NULL,
-  `end` INT NOT NULL,
-  `sv_type` ENUM('DEL', 'DUP', 'INV') NOT NULL,
-  PRIMARY KEY (`id`),
-  UNIQUE INDEX `id_UNIQUE` (`id` ASC));
-
-CREATE TABLE `HerediVar`.`sv_variant_hgvs` (
-  `id` INT UNSIGNED NOT NULL AUTO_INCREMENT,
-  `sv_variant_id` INT UNSIGNED NOT NULL,
-  `hgvs` VARCHAR(45) NOT NULL,
-  UNIQUE INDEX `id_UNIQUE` (`id` ASC),
-  PRIMARY KEY (`id`))
-ENGINE = InnoDB
-DEFAULT CHARACTER SET = utf8;
-
-GRANT SELECT, INSERT ON HerediVar.sv_variant TO 'HerediVar_user';
-GRANT SELECT, INSERT ON HerediVar.sv_variant TO 'HerediVar_superuser';
-GRANT SELECT ON HerediVar.sv_variant TO 'HerediVar_read_only';
-
-GRANT SELECT, INSERT, UPDATE, DELETE ON HerediVar.sv_variant_hgvs TO 'HerediVar_user';
-GRANT SELECT, INSERT, UPDATE, DELETE ON HerediVar.sv_variant_hgvs TO 'HerediVar_superuser';
-GRANT SELECT ON HerediVar.sv_variant_hgvs TO 'HerediVar_read_only';
-
-
-
-
-ALTER TABLE `HerediVar`.`variant` 
-DROP COLUMN `error_description`,
-DROP COLUMN `error`,
-ADD COLUMN `variant_type` ENUM('sv', 'small') NOT NULL DEFAULT 'small' AFTER `is_hidden`,
-ADD COLUMN `sv_variant_id` INT UNSIGNED NULL AFTER `variant_type`,
-CHANGE COLUMN `chr` `chr` ENUM('chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrMT') NULL ,
-CHANGE COLUMN `pos` `pos` INT(10) UNSIGNED NULL ,
-CHANGE COLUMN `ref` `ref` TEXT NULL ,
-CHANGE COLUMN `alt` `alt` TEXT NULL ,
-CHANGE COLUMN `orig_chr` `orig_chr` ENUM('chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrMT') NULL ,
-CHANGE COLUMN `orig_pos` `orig_pos` INT(10) UNSIGNED NULL DEFAULT 0 ,
-CHANGE COLUMN `orig_ref` `orig_ref` TEXT NULL ,
-CHANGE COLUMN `orig_alt` `orig_alt` TEXT NULL ,
-ADD UNIQUE INDEX `sv_variant_id_UNIQUE` (`sv_variant_id` ASC);
-;
-
-ALTER TABLE `HerediVar`.`sv_variant_hgvs` 
-ADD INDEX `FK_sv_variant_hgvs_sv_variant_idx` (`sv_variant_id` ASC);
-;
-ALTER TABLE `HerediVar`.`sv_variant_hgvs` 
-ADD CONSTRAINT `FK_sv_variant_hgvs_sv_variant`
-  FOREIGN KEY (`sv_variant_id`)
-  REFERENCES `HerediVar`.`sv_variant` (`id`)
-  ON DELETE CASCADE
-  ON UPDATE NO ACTION;
+ -- 
+ -- CREATE TABLE `HerediVar`.`sv_variant` (
+ --   `id` INT UNSIGNED NOT NULL AUTO_INCREMENT,
+ --   `chrom` ENUM('chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrMT') NOT NULL,
+ --   `start` INT NOT NULL,
+ --   `end` INT NOT NULL,
+ --   `sv_type` ENUM('DEL', 'DUP', 'INV') NOT NULL,
+ --   PRIMARY KEY (`id`),
+ --   UNIQUE INDEX `id_UNIQUE` (`id` ASC));
+ -- 
+ -- CREATE TABLE `HerediVar`.`sv_variant_hgvs` (
+ --   `id` INT UNSIGNED NOT NULL AUTO_INCREMENT,
+ --   `sv_variant_id` INT UNSIGNED NOT NULL,
+ --   `hgvs` VARCHAR(45) NOT NULL,
+ --   UNIQUE INDEX `id_UNIQUE` (`id` ASC),
+ --   PRIMARY KEY (`id`))
+ -- ENGINE = InnoDB
+ -- DEFAULT CHARACTER SET = utf8;
+ -- 
+ -- GRANT SELECT, INSERT ON HerediVar.sv_variant TO 'HerediVar_user';
+ -- GRANT SELECT, INSERT ON HerediVar.sv_variant TO 'HerediVar_superuser';
+ -- GRANT SELECT ON HerediVar.sv_variant TO 'HerediVar_read_only';
+ -- 
+ -- GRANT SELECT, INSERT, UPDATE, DELETE ON HerediVar.sv_variant_hgvs TO 'HerediVar_user';
+ -- GRANT SELECT, INSERT, UPDATE, DELETE ON HerediVar.sv_variant_hgvs TO 'HerediVar_superuser';
+ -- GRANT SELECT ON HerediVar.sv_variant_hgvs TO 'HerediVar_read_only';
+ -- 
+ -- 
+ -- 
+ -- 
+ -- ALTER TABLE `HerediVar`.`variant` 
+ -- DROP COLUMN `error_description`,
+ -- DROP COLUMN `error`,
+ -- ADD COLUMN `variant_type` ENUM('sv', 'small') NOT NULL DEFAULT 'small' AFTER `is_hidden`,
+ -- ADD COLUMN `sv_variant_id` INT UNSIGNED NULL AFTER `variant_type`,
+ -- CHANGE COLUMN `chr` `chr` ENUM('chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrMT') NULL ,
+ -- CHANGE COLUMN `pos` `pos` INT(10) UNSIGNED NULL ,
+ -- CHANGE COLUMN `ref` `ref` TEXT NULL ,
+ -- CHANGE COLUMN `alt` `alt` TEXT NULL ,
+ -- CHANGE COLUMN `orig_chr` `orig_chr` ENUM('chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrMT') NULL ,
+ -- CHANGE COLUMN `orig_pos` `orig_pos` INT(10) UNSIGNED NULL DEFAULT 0 ,
+ -- CHANGE COLUMN `orig_ref` `orig_ref` TEXT NULL ,
+ -- CHANGE COLUMN `orig_alt` `orig_alt` TEXT NULL ,
+ -- ADD UNIQUE INDEX `sv_variant_id_UNIQUE` (`sv_variant_id` ASC);
+ -- ;
+ -- 
+ -- ALTER TABLE `HerediVar`.`sv_variant_hgvs` 
+ -- ADD INDEX `FK_sv_variant_hgvs_sv_variant_idx` (`sv_variant_id` ASC);
+ -- ;
+ -- ALTER TABLE `HerediVar`.`sv_variant_hgvs` 
+ -- ADD CONSTRAINT `FK_sv_variant_hgvs_sv_variant`
+ --   FOREIGN KEY (`sv_variant_id`)
+ --   REFERENCES `HerediVar`.`sv_variant` (`id`)
+ --   ON DELETE CASCADE
+ --   ON UPDATE NO ACTION;
 
 ALTER TABLE `HerediVar`.`sv_variant_hgvs` 
-CHANGE COLUMN `` `transcript` VARCHAR(45) NULL ,
-CHANGE COLUMN `` `hgvs_type` ENUM('c', 'p', 'o') NOT NULL ;
+ADD COLUMN `transcript` VARCHAR(45) NULL AFTER `sv_variant_id`,
+ADD COLUMN `hgvs_type` ENUM('c', 'p', 'o') NOT NULL AFTER `hgvs`;
 
 
 ALTER TABLE `HerediVar`.`sv_variant_hgvs`