fixed variant import summary from variant import history

src/frontend_celery/webapp/download/download_routes.py

@@ -306,27 +306,27 @@ def assay_report(assay_id):
 ########################################
 # these can be used for debugging
 
-#@download_blueprint.route('/download/annotation_errors')
-#@require_permission(['admin_resources'])
-#def annotation_errors():
-#    conn = get_connection()
-#
-#    download_file_name = "annotation_errors_" + functions.get_today() + ".tsv"
-#
-#    annotation_stati, errors, warnings, total_num_variants = conn.get_annotation_statistics(exclude_sv=True)
-#
-#    helper = io.StringIO()
-#    helper.write("#" + "\t".join(["chrom", "pos", "ref", "alt", "error_msg"]) + '\n')
-#    for variant_id in errors:
-#        variant = conn.get_variant(variant_id)
-#        new_line = "\t".join([variant.chrom, str(variant.pos), variant.ref, variant.alt, errors[variant_id]])
-#        helper.write(new_line + "\n")
-#    
-#    buffer = io.BytesIO()
-#    buffer.write(helper.getvalue().encode())
-#    buffer.seek(0)
-#    
-#    return send_file(buffer, as_attachment=True, download_name=download_file_name, mimetype="text")
+@download_blueprint.route('/download/annotation_errors')
+@require_permission(['admin_resources'])
+def annotation_errors():
+    conn = get_connection()
+
+    download_file_name = "annotation_errors_" + functions.get_today() + ".tsv"
+
+    annotation_stati, errors, warnings, total_num_variants = conn.get_annotation_statistics(exclude_sv=True)
+
+    helper = io.StringIO()
+    helper.write("#" + "\t".join(["chrom", "pos", "ref", "alt", "error_msg"]) + '\n')
+    for variant_id in errors:
+        variant = conn.get_variant(variant_id)
+        new_line = "\t".join([variant.chrom, str(variant.pos), variant.ref, variant.alt, errors[variant_id]])
+        helper.write(new_line + "\n")
+
+    buffer = io.BytesIO()
+    buffer.write(helper.getvalue().encode())
+    buffer.seek(0)
+
+    return send_file(buffer, as_attachment=True, download_name=download_file_name, mimetype="text")
 
 
 #@download_blueprint.route('/recalculate_automatic_classes')

src/frontend_celery/webapp/static/js/variant_import_summary.js

@@ -189,9 +189,9 @@ function create_td_form(text_content, url, params) {
     new_input.classList.add("visually_hidden")
     form.appendChild(new_input)
 
-    var tmp = document.createElement('div')
-    tmp.textContent = params['import_variant_queue_id']
-    form.appendChild(tmp)
+    //var tmp = document.createElement('div')
+    //tmp.textContent = params['import_variant_queue_id']
+    //form.appendChild(tmp)
 
     var submit_button = document.createElement('button')
     submit_button.classList.add("btn")

src/frontend_celery/webapp/templates/user/variant_publish_history.html

@@ -31,7 +31,7 @@ <h1 class="bst"> {% block title %} Variant publish history {% endblock %} </h1>
             </thead>
             <tbody id="variantTableBody">
                 {% for entry in publish_queue_requests %}
-                <tr class="clickable" data-href="{{ url_for('user.variant_publish_summary', publish_queue_id = entry[0]) }}">
+                <tr class="clickable" data-href="{{ url_for('user.variant_publish_summary', publish_queue_id = entry.id) }}">
                     <td>{{ entry.user.full_name }}</td>
                     <td>{{ entry.requested_at }}</td>
                     <td>{{ entry.finished_at }}</td>