update database update

GC-HBOC · Feb 21, 2024 · 6915c9e · 6915c9e
1 parent 49ba77d
commit 6915c9e
Showing 1 changed file with 44 additions and 44 deletions.
diff --git a/resources/backups/database_dumper/update_database_5.sql b/resources/backups/database_dumper/update_database_5.sql
@@ -8,50 +8,50 @@
 -- ADD COLUMN `is_deleted` TINYINT(1) NOT NULL DEFAULT 0 AFTER `is_transcript_specific`;
 
 
-UPDATE `HerediVar`.`annotation_type` SET is_deleted = 1 WHERE title = "tp53db_bayes_del";
-
-
-CREATE TABLE `HerediVar`.`variant_cancerhotspots_annotation` (
-  `id` INT UNSIGNED NOT NULL AUTO_INCREMENT,
-  `variant_id` INT UNSIGNED NOT NULL,
-  `oncotree_symbol` VARCHAR(45) NOT NULL,
-  `cancertype` TEXT NOT NULL,
-  `tissue` TEXT NOT NULL,
-  `occurances` INT NOT NULL,
-  PRIMARY KEY (`id`),
-  UNIQUE INDEX `id_UNIQUE` (`id` ASC) );
-
-
-ALTER TABLE `HerediVar`.`variant_cancerhotspots_annotation` 
-ADD COLUMN `annotation_type_id` INT UNSIGNED NOT NULL AFTER `occurances`;
-
-
-INSERT INTO `HerediVar`.`annotation_type` (`title`, `display_title`, `description`, `value_type`, `version`, `version_date`, `group_name`, `is_transcript_specific`, `is_deleted`) VALUES ('cancerhotspots', 'cancerhotspots', 'The oncotree symbol, cancertype, tissue and number of occurances form the cancerhotspots database', 'text', 'v2', '2017-12-15', 'None', '0', '0');
-
-
-UPDATE `HerediVar`.`annotation_type` SET is_deleted = 1 WHERE title = "cancerhotspots_cancertypes";
-
-GRANT SELECT, INSERT, UPDATE, DELETE ON HerediVar.variant_cancerhotspots_annotation TO 'HerediVar_annotation';
-GRANT SELECT ON HerediVar.variant_cancerhotspots_annotation TO 'HerediVar_user';
-GRANT SELECT ON HerediVar.variant_cancerhotspots_annotation TO 'HerediVar_superuser';
-GRANT SELECT ON HerediVar.variant_cancerhotspots_annotation TO 'HerediVar_read_only';
-
-
-ALTER TABLE `HerediVar`.`variant_cancerhotspots_annotation` 
-CHARACTER SET = utf8 ;
-
-
-ALTER TABLE `HerediVar`.`variant_cancerhotspots_annotation` 
-CHANGE COLUMN `cancertype` `cancertype` VARCHAR(500) CHARACTER SET 'utf8mb4' NOT NULL ,
-CHANGE COLUMN `tissue` `tissue` VARCHAR(45) CHARACTER SET 'utf8mb4' NOT NULL ;
-
-
-UPDATE `HerediVar`.`annotation_type` SET group_name = "None" WHERE title = "cancerhotspots_ac";
-UPDATE `HerediVar`.`annotation_type` SET group_name = "None" WHERE title = "cancerhotspots_af";
-
-
-ALTER TABLE `HerediVar`.`variant_heredicare_annotation` 
-CHANGE COLUMN `lr_family` `lr_family` FLOAT NULL DEFAULT NULL ;
+-- UPDATE `HerediVar`.`annotation_type` SET is_deleted = 1 WHERE title = "tp53db_bayes_del";
+-- 
+-- 
+-- CREATE TABLE `HerediVar`.`variant_cancerhotspots_annotation` (
+--   `id` INT UNSIGNED NOT NULL AUTO_INCREMENT,
+--   `variant_id` INT UNSIGNED NOT NULL,
+--   `oncotree_symbol` VARCHAR(45) NOT NULL,
+--   `cancertype` TEXT NOT NULL,
+--   `tissue` TEXT NOT NULL,
+--   `occurances` INT NOT NULL,
+--   PRIMARY KEY (`id`),
+--   UNIQUE INDEX `id_UNIQUE` (`id` ASC) );
+-- 
+-- 
+-- ALTER TABLE `HerediVar`.`variant_cancerhotspots_annotation` 
+-- ADD COLUMN `annotation_type_id` INT UNSIGNED NOT NULL AFTER `occurances`;
+-- 
+-- 
+-- INSERT INTO `HerediVar`.`annotation_type` (`title`, `display_title`, `description`, `value_type`, `version`, `version_date`, `group_name`, `is_transcript_specific`, `is_deleted`) VALUES ('cancerhotspots', 'cancerhotspots', 'The oncotree symbol, cancertype, tissue and number of occurances form the cancerhotspots database', 'text', 'v2', '2017-12-15', 'None', '0', '0');
+-- 
+-- 
+-- UPDATE `HerediVar`.`annotation_type` SET is_deleted = 1 WHERE title = "cancerhotspots_cancertypes";
+-- 
+-- GRANT SELECT, INSERT, UPDATE, DELETE ON HerediVar.variant_cancerhotspots_annotation TO 'HerediVar_annotation';
+-- GRANT SELECT ON HerediVar.variant_cancerhotspots_annotation TO 'HerediVar_user';
+-- GRANT SELECT ON HerediVar.variant_cancerhotspots_annotation TO 'HerediVar_superuser';
+-- GRANT SELECT ON HerediVar.variant_cancerhotspots_annotation TO 'HerediVar_read_only';
+-- 
+-- 
+-- ALTER TABLE `HerediVar`.`variant_cancerhotspots_annotation` 
+-- CHARACTER SET = utf8 ;
+-- 
+-- 
+-- ALTER TABLE `HerediVar`.`variant_cancerhotspots_annotation` 
+-- CHANGE COLUMN `cancertype` `cancertype` VARCHAR(500) CHARACTER SET 'utf8mb4' NOT NULL ,
+-- CHANGE COLUMN `tissue` `tissue` VARCHAR(45) CHARACTER SET 'utf8mb4' NOT NULL ;
+-- 
+-- 
+-- UPDATE `HerediVar`.`annotation_type` SET group_name = "None" WHERE title = "cancerhotspots_ac";
+-- UPDATE `HerediVar`.`annotation_type` SET group_name = "None" WHERE title = "cancerhotspots_af";
+-- 
+-- 
+-- ALTER TABLE `HerediVar`.`variant_heredicare_annotation` 
+-- CHANGE COLUMN `lr_family` `lr_family` FLOAT NULL DEFAULT NULL ;
 
 
 UPDATE `HerediVar`.`annotation_type` SET is_deleted=1 WHERE title="arup_classification";