added warning message & minor changes

GC-HBOC · Jan 10, 2024 · 4d00fa3 · 4d00fa3
1 parent 8620133
commit 4d00fa3
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Showing 3 changed files with 3 additions and 2 deletions.
diff --git a/src/common/paths.py b/src/common/paths.py
@@ -226,7 +226,6 @@ def joinpaths(path, *paths):
     vep_path = joinpaths(toolsdir, "ensembl-vep")
     vep_cache_dir = joinpaths(vep_path, "data/cache")
     os.environ['PERL5LIB'] = vep_path + "/Bio/:" + vep_path + "/cpan/lib/perl5/:" + os.environ.get('PERL5LIB', '')
-    #ngs_bits_path = "/mnt/storage1/share/opt/ngs-bits-hg38-2022_04-70-g53bce65c/"
     ngs_bits_path = joinpaths(toolsdir, "ngs-bits/bin")
     htslib_path = joinpaths(toolsdir, "htslib-1.16")
 

diff --git a/src/frontend_celery/webapp/templates/index.html b/src/frontend_celery/webapp/templates/index.html
@@ -93,6 +93,7 @@ <h4>Overview</h4>
 <div class="bst bsb">
     <h4>Changelog</h4>
     <div class="underline">v 1.6 (10.01.2024)</div>
+    <div class="btn-pvs">!! The automatic classification algorithm is currently under construction. HerediVar is already prepared for it. Thus, you might encounter disabled buttons or dummy data. It will be enabled in a future update</div>
     <div>
         General changes:
         <ul>

diff --git a/tools/script/install_vep.sh b/tools/script/install_vep.sh
@@ -52,7 +52,8 @@ rm $vep_version.tar.gz
 
 #install dependencies
 mkdir -p $cpan_dir
-cpanm -l $cpan_dir -L $cpan_dir Set::IntervalTree URI::Escape DB_File Carp::Assert JSON::XS PerlIO::gzip DBI
+cpanm -l $cpan_dir -L $cpan_dir Set::IntervalTree URI::Escape DB_File Carp::Assert JSON::XS PerlIO::gzip DBI 
+cpanm -l $cpan_dir -L $cpan_dir Bio::PrimarySeqI
 
 #download VEP cache data
 mkdir -p $vep_data_dir