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changelog update
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MarvinDo committed Jan 16, 2024
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69 changes: 0 additions & 69 deletions src/frontend_celery/.nfs000001309139a197000007f1

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5 changes: 0 additions & 5 deletions src/frontend_celery/webapp/templates/doc/changelog.html
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Expand Up @@ -62,11 +62,6 @@ <h4>Changelog</h4>
<li>In BRCA2 v1.0.0 criteria supporting strength was not selectable</li>
<li>Sometimes, the classification scheme was not changeable in consensus classifications</li>
</ul>
Known issues:
<ul>
<li>HerediCare Center specific classifications are not available</li>
<li>HerediCare priors, log likelihood, segregation & cooccurance are not available</li>
</ul>
</div>

<div class="underline">v 1.5 (17.11.2023)</div>
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49 changes: 2 additions & 47 deletions src/frontend_celery/webapp/templates/index.html
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Expand Up @@ -92,7 +92,8 @@ <h4>Overview</h4>

<div class="bst bsb">
<h4>Changelog</h4>
<div class="underline">v 1.7 ()</div>
<div class="underline">v 1.7 (16.01.2024)</div>
<div class="btn-pvs">!! The automatic classification algorithm is currently under construction. HerediVar is already prepared for it. Thus, you might encounter disabled buttons or dummy data. It will be enabled in a future update</div>
<div>
General changes:
<ul>
Expand Down Expand Up @@ -123,52 +124,6 @@ <h4>Changelog</h4>
<li>HerediCare priors, log likelihood, segregation & cooccurance are not available</li>
</ul>
</div>

<div class="underline">v 1.6.1 (11.01.2024)</div>
<div>
Bugfixes:
<ul>
<li>Searching for 4M criterium with include_heredicare option would result in an error</li>
<li>Searching for class 4 consensus classification with include_heredicare option previously resulted in consensus class 4 and heredicare class 3+</li>
</ul>
</div>
<div class="underline">v 1.6 (10.01.2024)</div>
<div class="btn-pvs">!! The automatic classification algorithm is currently under construction. HerediVar is already prepared for it. Thus, you might encounter disabled buttons or dummy data. It will be enabled in a future update</div>
<div>
General changes:
<ul>
<li>Added form to create structural variants: DEL, DUP, INV</li>
<li>Added structural variants to browse variants table</li>
<li>Added START, END, SVTYPE, IMPRECISE info columns to vcf with structural variants</li>
<li>Added the general comment to the classified variants download</li>
<li>Added a separate download link for all classified structural variants</li>
<li>Added structural variants track to IGV</li>
<li>Added the coldspot annotation</li>
<li>Added variant search which allows the user to search directly for a specific variant using this format: chrom-pos-ref-alt OR chrom-start-end-sv_type in case of structural variants</li>
<li>Changed External ID search to overall ID search. It now also allows to search for heredivar variant ids.</li>
<li>Update search help</li>
<li>Added variant type search option</li>
<li>Updated ClinVar to v. 20240207</li>
</ul>
Bugfixes:
<ul>
<li>Fixed a bug where the criterium strength addition to the label would reset when the default strength was not its original strength.</li>
<li>Fixed the order of selectable criteria strengths on the classify variants page</li>
<li>Fixed a bug when submitting 4M classifications</li>
<li>Previously, updates to ClinVar submissions were not working & removed the 'customAssertionScore' from ClinVar submissions</li>
<li>Fixed a bug when trying to add all variants from a search to a list</li>
<li>In BRCA2 v1.0.0 criteria supporting strength was not selectable</li>
<li>Sometimes, the classification scheme was not changeable in consensus classifications</li>
<li>BRCA1 v1.0.0 PP1 criterium was missing strength selection and PP4 criterium was missing very strong strength</li>
<li>BRCA2 v1.0.0 PP1 and PP4 criteria were missing very strong strength</li>
<li>Fixed a bug when a standard or read only user was accessing the variant details page when a ClinVar submission was unfinished</li>
</ul>
Known issues:
<ul>
<li>HerediCare Center specific classifications are not available</li>
<li>HerediCare priors, log likelihood, segregation & cooccurance are not available</li>
</ul>
</div>
<a class="btn btn-outline-primary" href="{{url_for('doc.changelog')}}">previous changelog</a>
</div>

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