Update example

seqkit locate -i --bed -p ATGGGAGGAGAAGGGTATCGCGG example.fa -o example.bed
Functional-Genomics-Lab · Jul 31, 2024 · dcdc63e · dcdc63e
1 parent 631c10e
commit dcdc63e
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Showing 3 changed files with 4 additions and 1 deletion.
diff --git a/examples/example.bed b/examples/example.bed
@@ -0,0 +1 @@
+12B1-Scaf1_2534576-2534598:-_us:500_ds:500	500	523	ATGGGAGGAGAAGGGTATCGCGG	0	+
diff --git a/examples/samplesheet.csv b/examples/samplesheet.csv
@@ -0,0 +1,2 @@
+sample,bed
+original_example,examples/example.bed
diff --git a/nextflow.config b/nextflow.config
@@ -12,7 +12,7 @@ profiles {
     test {
         params {
             fasta = "${projectDir}/examples/example.fa"
-            targetseq = "ATGGGAGGAGAAGGGTATCGCGG"
+            input = "${projectDir}/examples/samplesheet.csv"
         }
     }
     test_multi {
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		@@ -0,0 +1 @@
		12B1-Scaf1_2534576-2534598:-_us:500_ds:500 500 523 ATGGGAGGAGAAGGGTATCGCGG 0 +
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		@@ -0,0 +1,2 @@
		sample,bed
		original_example,examples/example.bed