Merge pull request #10 from FRAMverse/bp_documentation

fixed links, numbered equations, numbered tables and made it glaringly obvious who needs to contribute to which sections.
FRAMverse · Sep 27, 2023 · a11f5b8 · a11f5b8
2 parents 2992df1 + ce23700
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diff --git a/base_chin_doc_appendix.Rmd b/base_chin_doc_appendix.Rmd
@@ -1,5 +1,6 @@
 ```{r page title, include=FALSE}
 page_title <- "Base Period Documentation - Appendix"
+##### TOO MUCH DATA IS BEING LOADED INTO THIS PAGE, RENDERED VERSION IS CRASHING - Ty
 ```
 
 --- 

diff --git a/base_chin_doc_calibration.Rmd b/base_chin_doc_calibration.Rmd
@@ -140,7 +140,7 @@ Pre-fishing abundance of a stock at age a and time step t. If terminal type =0 t
 
 * **LegalEnc~s,a,f,t~:** <a href="https://framverse.github.io/fram_doc/calcs_glossary.html#Legal-sized" target="_blank">Legal</a> <a href="https://framverse.github.io/fram_doc/calcs_glossary.html#Encounter" target="_blank">encounters</a> in a non-retention fishery. Stock specific encounters are calculated during the calibration by splitting total encounters into stocks and ages. For more information see <a href="https:// framverse.github.io/fram_doc/base_chin_doc_data.html#Non Retention Encounters" target="_blank">Non Retention Encounters</a> in the Data chapter.
 
-* **LegalProp~s,a,f,t~:** Proportion of the cohort which is above the <a href="https://framverse.github.io/fram_doc/calcs_glossary.html#Legal-sized" target="_blank">legal</a> <a href="https://framverse.github.io/fram_doc/calcs_glossary.html#Size_Limit" target="_blank">size limit</a> by stock, age, fishery, and time step. The legal proportion is caluclated during the calibration. For more information about the computation of the proportion legal/sublegal of a stock-age using the Von Bertalanffy growth equation see  <a href="https://framverse.github.io/fram_doc/calcs_data_chin.html#45_Size_Limit_Evaluations"> Size Limit Calculations</a>.
+* <div id="legal_prop_calibration">**LegalProp~s,a,f,t~:**</div> Proportion of the cohort which is above the <a href="https://framverse.github.io/fram_doc/calcs_glossary.html#Legal-sized" target="_blank">legal</a> <a href="https://framverse.github.io/fram_doc/calcs_glossary.html#Size_Limit" target="_blank">size limit</a> by stock, age, fishery, and time step. The legal proportion is caluclated during the calibration. For more information about the computation of the proportion legal/sublegal of a stock-age using the Von Bertalanffy growth equation see  <a href="https://framverse.github.io/fram_doc/calcs_data_chin.html#45_Size_Limit_Evaluations"> Size Limit Calculations</a>.
 
 * **LegalRelaseMortalityRate_f:** Release mortality rate of <a href="https://framverse.github.io/fram_doc/calcs_glossary.html#Legal-sized" target="_blank">legal sized</a> Chinook in a fishery. This is a calibration input. For more information see <a href="https:// framverse.github.io/fram_doc/base_chin_doc_data.html#Incidental_Mortality" target="_blank">Incidental Mortality</a> in the Data chapter.