Minor edit batch files

FAIRmat-NFDI · Jan 16, 2024 · fb0a996 · fb0a996
1 parent 1b2bd49
commit fb0a996
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Showing 2 changed files with 34 additions and 14 deletions.
diff --git a/debug/spctrscpy.batch.sh b/debug/spctrscpy.batch.sh
@@ -9,7 +9,8 @@ datasource="../../../../../paper_paper_paper/scidat_nomad_ebsd/bb_analysis/data/
 examples="InGaN_nanowires_spectra.edaxh5"
 examples="AlGaO.nxs"
 examples="GeSi.nxs"
-examples="VInP_108_L2.h5"
+examples="GeSn_13.nxs"
+# examples="VInP_108_L2.h5"
 
 for example in $examples; do
 	echo $example

diff --git a/debug/spctrscpy.dev.ipynb b/debug/spctrscpy.dev.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 1,
    "id": "6da1aea0-545b-446b-a3d1-1574af72f6c6",
    "metadata": {},
    "outputs": [],
@@ -18,10 +18,18 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 2,
    "id": "3889c47f-11c4-4bf3-97de-04fc52f0798d",
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "/home/kaiobach/Research/paper_paper_paper/scidat_nomad_ebsd/bb_analysis/data/development_spctrscpy/pdi/InGaN_nanowires_spectra.edaxh5\n"
+     ]
+    }
+   ],
    "source": [
     "src = \"/home/kaiobach/Research/paper_paper_paper/scidat_nomad_ebsd/bb_analysis/data/development_spctrscpy\"\n",
     "fnms = [(\"pdi\", \"InGaN_nanowires_spectra.edaxh5\"),\n",
@@ -31,35 +39,46 @@
     "        (\"ikz\", \"VInP_108_L2.h5\"),\n",
     "        (\"fhi\", \"CG71113 1513 HAADF-DF4-DF2-BF 1.2 Mx STEM.emd\"),\n",
     "        (\"adrien\", \"1613_Si_HAADF_610_kx.emd\"),\n",
-    "        (\"bruker\", \"pynx/46_ES-LP_L1_brg.bcf\"),\n",
-    "        (\"emd\", \"pynx/1613_Si_HAADF_610_kx.emd\"),\n",
-    "        (\"digitalmicrograph\", \"pynx/EELS_map_2_ROI_1_location_4.dm3\"),\n",
-    "        (\"oxfordinstruments\", \"pynx/H5OINA_examples_Specimen_1_Map_EDS_+_EBSD_Map_Data_2.h5oina\")]\n",
+    "        (\"adrien\", \"46_ES-LP_L1_brg.bcf\"),\n",
+    "        (\"benedikt\", \"EELS_map_2_ROI_1_location_4.dm3\"),\n",
+    "        (\"phillippe\", \"H5OINA_examples_Specimen_1_Map_EDS_+_EBSD_Map_Data_2.h5oina\")]\n",
     "# pyUSID, HSMA\n",
-    "case = 5  # 5 # len(fnms) - 1  # len(fnms) - 1\n",
+    "case = 0  # 5 # len(fnms) - 1  # len(fnms) - 1\n",
     "fnm = f\"{src}/{fnms[case][0]}/{fnms[case][1]}\"\n",
     "print(fnm)"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 3,
    "id": "a4d9ef96-3c70-4c12-80ba-ea4a7d716d47",
    "metadata": {},
    "outputs": [],
    "source": [
-    "H5Web(fnm)"
+    "# H5Web(fnm)"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 4,
    "id": "221abf67-0d88-4088-9cc7-e0d9b85c4699",
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "data": {
+      "application/x-hdf5": "/home/kaiobach/Research/hu_hu_hu/sprint17/pynx/pynxtools/debug/spctrscpy/debug.InGaN_nanowires_spectra.edaxh5.nxs",
+      "text/plain": [
+       "<jupyterlab_h5web.widget.H5Web object>"
+      ]
+     },
+     "execution_count": 4,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
    "source": [
     "# resulting NeXus artifact\n",
-    "H5Web(f\"debug.{fnms[case][1]}.nxs\")"
+    "H5Web(f\"spctrscpy/debug.{fnms[case][1]}.nxs\")"
    ]
   },
   {