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Merge pull request #453 from FAIRmat-NFDI/avoid-name-conflict
Avoid name conflict with BaseSection classes
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,117 @@ | ||
| """This is a code that performs several tests on nexus tool""" | ||
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| # | ||
| # Copyright The NOMAD Authors. | ||
| # | ||
| # This file is part of NOMAD. See https://nomad-lab.eu for further info. | ||
| # | ||
| # Licensed under the Apache License, Version 2.0 (the "License"); | ||
| # you may not use this file except in compliance with the License. | ||
| # You may obtain a copy of the License at | ||
| # | ||
| # http://www.apache.org/licenses/LICENSE-2.0 | ||
| # | ||
| # Unless required by applicable law or agreed to in writing, software | ||
| # distributed under the License is distributed on an "AS IS" BASIS, | ||
| # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| # See the License for the specific language governing permissions and | ||
| # limitations under the License. | ||
| # | ||
|
|
||
| import pytest | ||
|
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||
| try: | ||
| from nomad.metainfo import Section | ||
| except ImportError: | ||
| pytest.skip("nomad not installed", allow_module_level=True) | ||
|
|
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| from typing import Any | ||
|
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| from pynxtools.nomad.schema import nexus_metainfo_package | ||
| from pynxtools.nomad.utils import __rename_nx_for_nomad as rename_nx_for_nomad | ||
|
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|
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| @pytest.mark.parametrize( | ||
| "path,value", | ||
| [ | ||
| pytest.param("name", "nexus"), | ||
| pytest.param("NXobject.name", "NXobject"), | ||
| pytest.param(rename_nx_for_nomad("NXentry") + ".nx_kind", "group"), | ||
| pytest.param(rename_nx_for_nomad("NXdetector") + ".real_time__field", "*"), | ||
| pytest.param(rename_nx_for_nomad("NXentry") + ".DATA.nx_optional", True), | ||
| pytest.param(rename_nx_for_nomad("NXentry") + ".DATA.nx_kind", "group"), | ||
| pytest.param(rename_nx_for_nomad("NXentry") + ".DATA.nx_optional", True), | ||
| pytest.param( | ||
| rename_nx_for_nomad("NXdetector") + ".real_time__field.name", | ||
| "real_time__field", | ||
| ), | ||
| pytest.param( | ||
| rename_nx_for_nomad("NXdetector") + ".real_time__field.nx_type", "NX_NUMBER" | ||
| ), | ||
| pytest.param( | ||
| rename_nx_for_nomad("NXdetector") + ".real_time__field.nx_units", "NX_TIME" | ||
| ), | ||
| pytest.param(rename_nx_for_nomad("NXarpes") + ".ENTRY.DATA.nx_optional", False), | ||
| pytest.param(rename_nx_for_nomad("NXentry") + ".nx_category", "base"), | ||
| pytest.param( | ||
| rename_nx_for_nomad("NXdispersion_table") | ||
| + ".refractive_index__field.nx_type", | ||
| "NX_COMPLEX", | ||
| ), | ||
| pytest.param( | ||
| rename_nx_for_nomad("NXdispersive_material") | ||
| + ".ENTRY.dispersion_x." | ||
| + "DISPERSION_TABLE.refractive_index__field.nx_type", | ||
| "NX_COMPLEX", | ||
| ), | ||
| pytest.param(rename_nx_for_nomad("NXapm") + ".nx_category", "application"), | ||
| ], | ||
| ) | ||
| def test_assert_nexus_metainfo(path: str, value: Any): | ||
| """ | ||
| Test the existence of nexus metainfo | ||
| pytest.param('NXdispersive_material.inner_section_definitions[0].sub_sections[1].sub_section.inner_section_definitions[0].quantities[4].more["nx_type"] | ||
| """ | ||
| current = nexus_metainfo_package | ||
| for name in path.split("."): | ||
| elements: list = [] | ||
| if name.endswith("__field"): | ||
| subelement_list = getattr(current, "quantities", None) | ||
| if subelement_list: | ||
| elements += subelement_list | ||
| else: | ||
| subelement_list = getattr(current, "section_definitions", None) | ||
| if subelement_list: | ||
| elements += subelement_list | ||
| subelement_list = getattr(current, "sub_sections", None) | ||
| if subelement_list: | ||
| elements += subelement_list | ||
| subelement_list = getattr(current, "attributes", None) | ||
| if subelement_list: | ||
| elements += subelement_list | ||
| subelement_list = current.m_contents() | ||
| if subelement_list: | ||
| elements += subelement_list | ||
| for content in elements: | ||
| if getattr(content, "name", None) == name: | ||
| current = content # type: ignore | ||
| if getattr(current, "sub_section", None): | ||
| current = current.section_definition | ||
| break | ||
| else: | ||
| current = getattr(current, name, None) | ||
| if current is None: | ||
| assert False, f"{path} does not exist" | ||
|
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||
| if value == "*": | ||
| assert current is not None, f"{path} does not exist" | ||
| elif value is None: | ||
| assert current is None, f"{path} does exist" | ||
| else: | ||
| assert current == value, f"{path} has wrong value" | ||
|
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| if isinstance(current, Section): | ||
| assert current.nx_kind is not None | ||
| for base_section in current.all_base_sections: | ||
| assert base_section.nx_kind == current.nx_kind |
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