Successful run-through of all pyxem-processed examples (2D/3D) none o…

…f them failing, maximum RAM peaking at 2.7GB for largest 2D example 229_2096.oh5 with 20.3mio scan points and 23GB for largest 3D map 067_0003.dream3d with 48.9mio scan points

pynxtools/dataconverter/readers/em/subparsers/hfive_bruker.py

@@ -97,7 +97,7 @@ def parse_and_normalize_group_ebsd_header(self, fp, ckey: str):
             raise ValueError(f"Unable to parse {grp_name} !")
 
         self.tmp[ckey]["dimensionality"] = 2  # TODO::QUBE can also yield 3D datasets
-        if read_strings_from_dataset(fp[f"{grp_name}/Grid Type"]) == "isometric":
+        if read_strings_from_dataset(fp[f"{grp_name}/Grid Type"][()]) == "isometric":
             self.tmp[ckey]["grid_type"] = SQUARE_GRID
         else:
             raise ValueError(f"Unable to parse {grp_name}/Grid Type !")

pyxem.batch.sh

@@ -36,6 +36,7 @@ examples="026_0046.h5oina 026_0049.h5oina 026_0050.h5oina 026_0052.h5oina 066_00
 # examples="244_0014.dream3d"
 # examples="SmallIN100_Final.dream3d"
 # examples="067_0003.dream3d"  # very large 3D EBSD takes ~40GB RAM for processing
+# examples="174_0031.h5 130_2085.h5 130_2092.h5 130_2093.h5 130_2089.h5 130_2087.h5 130_2088.h5 130_2090.h5 130_2091.h5 124_0036.h5 130_2082.h5 130_2083.h5 130_2084.h5 130_2094.h5 130_0003.h5 130_2086.h5 124_0002.h5 144_0043.h5 066_0013.h5 066_0034.h5 066_0016.h5 066_0023.h5 066_0025.h5"
 
 for example in $examples; do
 	echo $example