Merge branch 'add-pyarpes-and-sed-example' into 'main'

Add k-space conversion and sed postprocessing example See merge request nomad-lab/north/mpes!4
FAIRmat-NFDI · Oct 8, 2024 · 738547f · 738547f
2 parents 6738a0a + 59b1ad2
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diff --git a/src/pynxtools_mpes/nomad/examples/E1 Convert to NeXus.ipynb b/src/pynxtools_mpes/nomad/examples/E1 Convert to NeXus.ipynb
@@ -1,24 +1,21 @@
 {
  "cells": [
   {
-   "attachments": {},
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "# Converting Multidimensional Photoemission Spectroscopy (MPES) data into the NeXus format"
    ]
   },
   {
-   "attachments": {},
    "cell_type": "markdown",
    "metadata": {},
    "source": [
     "This example shows how to convert x-array based h5 measurement files as generated by the [preprocessing output](https://www.nature.com/articles/s41597-020-00769-8) of the software used at the Fritz-Haber Institute into the [MPES NeXus format](https://manual.nexusformat.org/classes/contributed_definitions/NXmpes.html#nxmpes).\n",
-    "For an example on how to generate such a h5 measurement file please refer to the [binning example](./E2%20Binning%20of%20WSe2.ipynb)."
+    "For an example on how to generate such a h5 measurement file please refer to the [postprocessing example](./E2%20ARPES%20postprocessing.ipynb)."
    ]
   },
   {
-   "attachments": {},
    "cell_type": "markdown",
    "metadata": {},
    "source": [
@@ -41,7 +38,6 @@
    ]
   },
   {
-   "attachments": {},
    "cell_type": "markdown",
    "metadata": {},
    "source": [
@@ -58,23 +54,22 @@
     "dataconverter \\\n",
     "    --reader mpes \\\n",
     "    --nxdl NXmpes \\\n",
-    "    --input-file MoTe2.h5 \\\n",
-    "    --input-file config_file.json \\\n",
-    "    --output MoTe2.mpes.nxs\n",
+    "    --output MoTe2.mpes.nxs \\\n",
+    "    MoTe2.h5 \\\n",
+    "    config_file.json\n",
     "```"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 1,
    "metadata": {},
    "outputs": [],
    "source": [
     "from pynxtools.dataconverter.convert import convert"
    ]
   },
   {
-   "attachments": {},
    "cell_type": "markdown",
    "metadata": {},
    "source": [
@@ -100,7 +95,6 @@
    ]
   },
   {
-   "attachments": {},
    "cell_type": "markdown",
    "metadata": {
     "tags": []
@@ -133,7 +127,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -147,7 +141,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.13"
+   "version": "3.8.12"
   },
   "vscode": {
    "interpreter": {