generated vapor deposition module (#31)

* generated vapor deposition module

* created physical vapor deposition module

* readded PVD specific classes to support back compatibility

* added chemical vapor deposition module

* ruff formatting to init.py

* modified ThinLayerStack according to the CompositeSystem base class

* fixed some issues

* Formatting and removing ELNAnnotations of array quantities

* Update src/nomad_material_processing/vapor_deposition.py

Co-authored-by: Hampus Näsström <[email protected]>

* Update src/nomad_material_processing/vapor_deposition.py

Co-authored-by: Hampus Näsström <[email protected]>

* Update src/nomad_material_processing/vapor_deposition.py

Co-authored-by: Hampus Näsström <[email protected]>

* Update src/nomad_material_processing/vapor_deposition.py

Co-authored-by: Hampus Näsström <[email protected]>

* Apply suggestions from code review

Co-authored-by: Hampus Näsström <[email protected]>

* Update src/nomad_material_processing/vapor_deposition.py

Co-authored-by: Hampus Näsström <[email protected]>

* adding one example plot, layer subsection, and SubstrateSetup

* fix typos and class names

* Implemented suggestions from data modeling meeting

* Fixed plot annotation

* Updated __init__.py

Changed all annotations to use ELNComponentEnum

Changes SubstrateSlab back to Substrate

Added normalize function to ThinFilmStack

* Aligning PVD sections with new VD sections

* added classes to CVD module

* Corrected inheritance in PVD module

* fix references

* bubblers in CVD

* Changed DepositionRate name and moved it to PVD

* removed classes from CVD

* Added to_task method to VaporDepositionStep

Added a method for assigning material and layers as inputs and outputs of steps

* fix import in CVD

* Added back SubstrateTemperature plot

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Co-authored-by: Hampus Näsström <[email protected]>