added ruff for import sorting of generated code

pyproject.toml

@@ -14,7 +14,6 @@ pydantic-xml = "^2.9.0"
 numpy = "^1.26.3"
 pandas = "^2.1.4"
 jinja2 = "^3.1.3"
-black = "^23.12.1"
 typer = "^0.9.0"
 pyyaml = "^6.0.1"
 toml = "^0.10.2"
@@ -31,12 +30,13 @@ markdown-it-py = "^3.0.0"
 rich = "^13.7.0"
 lxml = "^5.1.0"
 python-frontmatter = "^1.1.0"
+ruff = "^0.4.1"
+black = "23.12.1"
 
 [tool.poetry.group.dev.dependencies]
 coverage = "^7.4.0"
 pytest-cov = "^4.1.0"
 
-
 [tool.poetry.group.hdf5.dependencies]
 h5py = "^3.10.0"
 

sdRDM/generator/codegen.py

@@ -163,9 +163,13 @@ def save_rendered_to_file(rendered: str, path: str, use_formatter: bool) -> None
             [
                 sys.executable,
                 "-m",
-                "autoflake",
-                "--in-place",
-                "--remove-all-unused-imports",
+                "ruff",
+                "check",
+                "--fix",
+                "--select",
+                "I",
+                "--select",
+                "F",
                 path,
             ]
         )
@@ -209,3 +213,14 @@ def _write_json_schemes(libpath: str, lib_name: str):
 
         with open(path, "w") as f:
             json.dump(cls.model_json_schema(), f, indent=2)
+
+
+if __name__ == "__main__":
+    # Test the function
+    from sdRDM.generator import generate_python_api
+
+    generate_python_api(
+        path="/Users/max/Documents/GitHub/pyeed/specifications/sequence_record.md",
+        dirpath="/Users/max/Documents/GitHub/pyeed/pyeed_ontology",
+        libname="pyeedd",
+    )