Model update

EnzymeML · Sep 19, 2024 · ecffa5b · ecffa5b
1 parent ce8a10b
commit ecffa5b
Show file tree

Hide file tree

Showing 3 changed files with 37 additions and 13 deletions.
diff --git a/docs/model.md b/docs/model.md
@@ -73,7 +73,7 @@ This page provides comprehensive information about the structure and components
 
 __title__ `string`
 
-- title of the publication
+- Title of the publication
 
 
 __doi__ `string`
@@ -405,7 +405,7 @@ __iupac__ `string`
 - IUPAC name
 
 
-__database used__ `string`
+__database_used__ `string`
 
 - name of the database
 
@@ -445,6 +445,11 @@ __activator__ `string`
 ### ResultsSet
 
 
+__name__ `string`
+
+- Name of the result set
+
+
 __initial_kinetics__ [`InitialKinetics`](#initialkinetics)
 
 - Km, kcat, V, kcat/Km, V/Km
@@ -461,23 +466,28 @@ __inhibition__ [`Inhibition`](#inhibition)
 ### InitialKinetics
 
 
-__Km__ [`Parameter`](#parameter)
+__placeholder__ `string`
+
+- placeholder for the type of kinetics
+
+
+__km__ [`Parameter`](#parameter)
 
 - `Descriptor`: value, SE, unit
 
 __kcat__ [`Parameter`](#parameter)
 
 - `Descriptor`: value, SE, unit
 
-__V__ [`Parameter`](#parameter)
+__v__ [`Parameter`](#parameter)
 
 - `Descriptor`: value, SE, unit
 
-__kcat/Km__ [`Parameter`](#parameter)
+__kcat_over_km__ [`Parameter`](#parameter)
 
 - `Descriptor`: value, SE, unit
 
-__V/Km__ [`Parameter`](#parameter)
+__v_over_km__ [`Parameter`](#parameter)
 
 - `Descriptor`: value, SE, unit
 

diff --git a/schemes/strenda.json b/schemes/strenda.json
@@ -5,7 +5,7 @@
   "properties": {
     "title": {
       "title": "title",
-      "description": "title of the publication",
+      "description": "Title of the publication",
       "type": "string"
     },
     "doi": {

diff --git a/schemes/strenda.xsd b/schemes/strenda.xsd
@@ -26,7 +26,7 @@
             <xs:element name="title" type="xs:string">
                 <xs:annotation>
                     <xs:documentation>
-                        title of the publication
+                        Title of the publication
                     </xs:documentation>
                 </xs:annotation>
             </xs:element>
@@ -469,7 +469,7 @@
                     </xs:documentation>
                 </xs:annotation>
             </xs:element>
-            <xs:element name="database used" type="xs:string">
+            <xs:element name="database_used" type="xs:string">
                 <xs:annotation>
                     <xs:documentation>
                         name of the database
@@ -523,6 +523,13 @@
     <!-- ResultsSet Definition -->
     <xs:complexType name="ResultsSetType">
         <xs:sequence>
+            <xs:element name="name" type="xs:string">
+                <xs:annotation>
+                    <xs:documentation>
+                        Name of the result set
+                    </xs:documentation>
+                </xs:annotation>
+            </xs:element>
             <xs:element name="initial_kinetics" type="InitialKineticsType">
                 <xs:annotation>
                     <xs:documentation>
@@ -538,11 +545,18 @@
     <!-- InitialKinetics Definition -->
     <xs:complexType name="InitialKineticsType">
         <xs:sequence>
-            <xs:element name="Km" type="ParameterType"/>
+            <xs:element name="placeholder" type="xs:string">
+                <xs:annotation>
+                    <xs:documentation>
+                        placeholder for the type of kinetics
+                    </xs:documentation>
+                </xs:annotation>
+            </xs:element>
+            <xs:element name="km" type="ParameterType"/>
             <xs:element name="kcat" type="ParameterType"/>
-            <xs:element name="V" type="ParameterType"/>
-            <xs:element name="kcat/Km" type="ParameterType"/>
-            <xs:element name="V/Km" type="ParameterType"/>
+            <xs:element name="v" type="ParameterType"/>
+            <xs:element name="kcat_over_km" type="ParameterType"/>
+            <xs:element name="v_over_km" type="ParameterType"/>
         </xs:sequence>
     </xs:complexType>