Web-server for SCAMPI2

Description:

This is the web-server implementation of the SCAMPI2 workflow.
[github](https://github.com/christoph-peters/scampi2)

The web-server is developed with Django v1.11.15

This software is open source and licensed under the GPL v3 license (a copy
of the license is included in the repository)

Reference

Improved topology predictions using the first and last hydrophobic helix rule. Christoph Peters, Konstantinos D. Tsirigos, Nanjiang Shu, Arne Elofsson. Bioinformatics. 2015 Dec 7. pii: btv709. PubMed

Author

Nanjiang Shu

System developer at NBIS

Email: [email protected]

Installation

1. Install dependencies for the web server

   • Apache
   • mod_wsgi

2. Install the virtual environments by

   $ bash setup_virtualenv.sh

3. Create the django database db.sqlite3

4. Run

   $ bash init.sh

   to initialize the working folder

5. In the folder proj, create a softlink of the setting script.

   For development version

    $ ln -s dev_settings.py settings.py
   

   For release version

    $ ln -s pro_settings.py settings.py
   

   Note: for the release version, you need to create a file with secret key and stored at /etc/django_pro_secret_key.txt

6. On the computational node. run

   $ virtualenv env --system-site-packages
   

   to make sure that python can use all other system-wide installed packages