Release for encoded v102.0

1.	ENCD-5361-bug-fix-biosample-summary (#3378)
2.	Update to snovault 1.0.45 (#3376)
3.	ENCD-5268-analysis-object (#3323)
	SNO-154 fix magic to add json types
5.	SNO-156 Use pyramid_retry 2.1.1 (#3359)
6.	ENCD-5353-cart-limit (#3375)
7.	ENCD-5237 add body map to reference epigenome (#3366)
8.	ENCD-5255-add-encode4-atac-seq-qc-audits (#3368)
9.	ENCD-5331-target-factorbook-dbxref (#3360)
10.	ENCD-5343-adjusting-internal-status-property (#3372)
11.	ENCD-5185-fix-replication-type-for-pooled-clone-sequencing-experiments (#3361)
12.	ENCD-5329-read-depth-audit-update (#3369)
13.	ENCD-5315 gemBS alignment QC (#3365)
14.	ENCD-5272-Model-donor-age-when-biosample-is-collected (#3362)
15.	ENCD-5341-update-deployment-tags (#3371)
16.	ENCD-5314-add-new-output-types (#3354)
17.	ENCD-5298-add-fileset-to-pipeline-object (#3358)
18.	ENCD-5336-matrix-desc (#3370)
19.	ENCD-5309-cart-locks (#3355)
20.	ENCD-5308-fix-react-error-on-summary-page (#3348)
21.	ENCD-5307-add-dnase-footprints-quality-metric (#3356)
22.	ENCD-5303-remove-other-plasmid-lib-type (#3347)
23.	ENCD-5239-fix-css-problem-on-examine-loci-reference-form(#3318)
24.	ENCD-3470-blocked-out-facet-setting (#3357)
25.	ENCD-5342-remove-page-titles (#3363)
26.	ENCD-5349-add-element-location-transgenic-expt (#3364)
27.	ENCD-5297-add-ATAC-adapters-to-library (#3353)
28.	ENCD-4438-remove-stage-timepoint (#3349)
29.	ENCD-5338-add-idr-ranked-peak-file-format-type (#3350)
30.	ENCD-5333-fix-google-dataset-author (#3344)
31.	ENCD-5327-fastq-demultiplex-analysis-step-type (#3342)
32.	ENCD-5113 fix curl command to get metadata.tsv(#3343)
33.	ENCD-5320-fix-sescc-element-url (#3337)
34.	ENCD-5321-remove-lib-frag-method-enum (#3339)
35.	ENCD-5306-update-hotspot-qc-metric (#3352)
36.	ENCD-5310-choose-analysis (#3340)
37.	ENCD-5285-table-lines (#3330)
38.	ENCD-5332-sequence-barcodes-reference-type (#3351)
39.	ENCD-4857-add-biosample_ontology.classification-to-matrix (#3331)
40.	ENCD-5328 fix released start date (#3346)

Release for encoded v101.0

ENCD-5324-experiment-perturbed (#3338)
ENCD-5296-fix-matrix-header-link (#3329)
ENCD-5317-fix-bug-biosample-summary (#3332)
ENCD-5319 fix date released link (#3335)
ENCD-5322-fix-table-capitalization (#3334)
ENCD-5191 add ENCSR id to cart (#3336)
ENCD-5294-move-4-read-fraction-QMs (#3320)
ENCD-5302-cart-link (#3328)
ENCD-5181-perturbed-facet-normal (#3325)
ENCD-5267 body map updates (#3326)
ENCD-5270-library-adapter (#3312)
ENCD-5278-add-binding-to-category-property (#3310)
ENCD-5214-in-vivo-enhancer-screen (#3314)
ENCD-5271-add-atac-dnase-output-types (#3309)
ENCD-5243 fix crash on date submitted (#3300)
ENCD-5281 Remove extra files.assembly column (#3324)
ENCD-5276-add-kallisto-properties-to-library (#3321)
ENCD-5292 Change txt extension to txt.gz (#3319)
ENCD-5277 Update amis v100 and typos (#3307)
ENCD-5300-add-audit-field-to-metadata-tsv (#3322)
ENCD-5265-correct-stem-cell-matrix-links (#3298)
ENCD-5289-fcc-remove-assay-type-facet (#3316)
ENCD-5254-add-pseudoalignment-analysis-step-type (#3317)
ENCD-5238-organ-system-slims-assay-update (#3297)
ENCD-4913-fix-filtered-url-in-matrix (#3294)
ENCD-5262 add skinny tracks (#3306)
ENCD-5236-display-fcc-prop (#3315)
ENCD-5261-copy-schema (#3311)
ENCD-5269-audit-annotation-file-derived-from-revoked (#3302)
ENCD-5225-display-cropped-read-length-and-tolerance (#3287)
ENCD-4614-no-assembly-graph (#3299)
ENCD-4927 Internal Audit details not showing up for GM
ENCD-5260 Cart auto-save
ENCD-5159-show-donor-on-ref-page (#3289)
ENCD-5136-hide-nih-in-facets-on-0-results (#3290)

encodeD release v100

v100.0 :tada:

1.	ENCD-5216 deploy demo pointing at pg (#3273)
    ⁃ ENCD-5242 refactor cloud config
    ⁃ ENCD-5235 fix wale backup error
    ⁃ ENCD-5240 fix lib magic dependency
    ⁃ ENCD-5212 deploy demo at ES cluster
    ⁃ ENCD-5234 fix key validation upload bucket
2.	ENCD-5275-fix-json-ld-exploding-without-at-type (#3301)
3.	ENCD-4215-enable-google-set (#3282)
4.	ENCD-5258-add-file-upgrade (#3292)
5.	ENCD-5264 fix error on pages missing @type (#3293)
6.	ENCD-5259-fix-validation-fail-reference-objects (#3291)
7.	ENCD-5266 change description to title for index_of property
8.	ENCD-5116-pipeline-graph (#3278)
9.	ENCD-5178 add body map to summary page (#3285)
10.	ENCD-5228-add-enc4-chip-pipeline-to-audits (#3288)
11.	ENCD-5229-fix-run-type-dependency (#3270)
12.	ENCD-5244-add-new-enums-for-DAC-pipeline (#3286)
13.	ENCD-5226-add-bulk-RNA-seq-pipeline-to-audits (#3276)
14.	ENCD-5217-expt-fcc-audit-inconsistent-gms (#3284)
15.	ENCD-5157-add-to-biosample-summary-and-display (#3280)
16.	ENCD-4378-remove-restrict-target-dbxref (#3271)
17.	ENCD-5100-index-reads-grouping (#3281)
18.	ENCD-5215-improve-Publication-link-to-PublicationData (#3283)
19.	ENCD-5204-fix-ExperimentSeries-QC-table-crash-for-no-target-experiments (#3269)
20.	ENCD-4644-add-details-about-fastq-signatures (#3272)
21.	ENCD-5220-add-crop-length-tolerance-to-file (#3277)
22.	ENCD-5230-change-tech-replicate-field-of-metadata-tsv (#3268)
23.	ENCD-5211-add-Mint-ChIP-control-title (#3262)
24.	ENCD-5201-biosample-organ-system-slims (#3275)
25.	ENCD-5209-add-elements-ref-to-analysis-step-schema (#3264)
26.	ENCD-5232-add-rDHSs-to-rep-DNase-hypersensitivity-sites (#3267)
27.	ENCD-5203-biosample-audit-inconsistent-GMs (#3274)
28.	ENCD-5151-fix-software-breadcrumb (#3245)
29.	ENCD-5099-add-index-read-on-file-page (#3256)
30.	ENCD-5105-SECC-Stem-cell-matrix (#3203)
31.	ENCD-5200-add-FCC-ExperimentTable (#3266)
32.	ENCD-5210-make-documents-searchable (#3263)
33.	ENCD-5206-add-element-quantification-to-file-output-type (#3265)
34.	ENCD-4991-display-assembly-N-gene_annot-on-UI (#3248)
35.	ENCD-5218-batch-dl-issue (#3259)
36.	ENCD-5070-missing-img (#3260)

v99.0

1.	ENCD-5223-metadata-shift (#3258)
2.	ENCD-5221-smaller-es-cluster-master (#3257)
3.	ENCD-5171-download-fastq-files (#3252)
4.	ENCD-5184-comp-model-software-version-unique (#3250)
5.	ENCD-5152-add-app-json-to-attachments (#3247)
6.	ENCD-5148-adjust-GM-for-homologous-recombination-and-CRISPR-intro (#3242)
7.	ENCD-5111-cleanup-deploy-output (#3251)
8.	ENCD-5194-add-grnas-file-output-type (#3234)
9.	ENCD-5169-humandonor-external-ids (#3226)
10.	ENCD-5195-add-gene-to-reference-page (#3244)
11.	ENCD-5208-circle-ci-install-fix (#3249)
12.	ENCD-5207-update-snovault-1.0.44 (#3246)
13.	ENCD-4374-fix-restrict-file-edit-checkbx (#3237)
14.	ENCD-5006-Fix-target-breadcrumb (#3241)
15.	ENCD-5140-add-clear-classification-of-related-datasets (#3239)
16.	ENCD-5127-add-biosample-ontology-fce-requirement (#3240)
17.	ENCD-5160-cropped-read-length-bam (#3232)
18.	ENCD-5198-update-libmagic-ubuntu-with-amis (#3238)
19.	ENCD-5202-lower-indexing-RAM-footprint (#3243)
20.	ENCD-5164 add production amis (#3229)
21.	ENCD-5199-add-ref-epig-bdd-and-polish (#3233)
22.	SNO-143-switch-update-readmes (#3221)
23.	ENCD-5018 Change tagged target audits severity to Warning (#3230)
24.	ENCD-5149-gene-and-target-dbxrefs-for-GeneCards (#3220)
25.	ENCD-5128-calculate-crispr-assay-titles (#3224)
26.	ENCD-5172-add-output-type-regulatory-elements (#3227)
27.	ENCD-5161-add-fragmentation-duration-props-to-library (#3235)
28.	ENCD-5173-add-to-reference-summary-page (#3228)
29.	ENCD-5197 return paths from library calculated property
30.	SNO-144-redirect-downloads-through-nginx-or-apache (#3182)
31.	ENCD-5166 change organoid color (#3213)
32.	ENCD-5189-additional-pytest-cleanup (#3223)
33.	ENCD-5131-add-sprite-assay-ontology-update (#3215)
34.	ENCD-5163 deemphasize hg19 screen link (#3211)

Release for encoded v98.0 (snovault 1.0.43)

ENCD-5186-Fix-FCC-audit-script-error-with-biosample-ontology (#3219)
ENCD-5175-fix-validation-error-crispr-insertion (#3214)
ENCD-5180-re-matrix-left-align-term-names (#3216)
ENCD-5182 respect filters for viz (#3217)
ENCD-5039-reorganize-pytest-fixtures-set (#3206)
Update snovault 1.0.43 (#3212)
ENCD-4540 Cart visualizations (#3205)
SNO-146-clean-up-threadmanager-on-pyramid-retry-exception (#3207)
ENCD-5133-calculate-for-analyses (#3200)
ENCD-5145-remove-gRNA-tiled-loci-update-examined-loci (#3183)
ENCD-5150-rendering-error (#3209)
ENCD-5168-allow-apache-status-monitoring (#3210)
ENCD-5123-expt-audit-processed-files-analyses (#3192)
ENCD-2666 mouse dev matrix (#3198)
ENCD-5090-apply-experiment-audits-to-fcc-experiments (#3169)
ENCD-5117-update-mixed-read-length-audit (#3193)
ENCD-5110-add-gm-categories (#3181)
ENCD-5125-add-factorbook (#3191)
ENCD-5087-add-subreads-dependencies (#3180)
ENCD-5082-file-pagination (#3201)
ENCD-5051-generating-QC-table-for-experimental-series (#3138)
ENCD-5129-check-if-view-has-type (#3199)
ENCD-5143-remove-properties-gene_type_quant_qc (#3185)
ENCD-5144-add-dna-cloning-biosampletype (#3184)
ENCD-5139-add-post-nucleic-acid-time-biosample (#3188)
ENCD-5122-add-Donor-to-Reference (#3197)
ENCD-5109-fix-file-validation-audit-for-annotations (#3194)
ENCD-5080-add-library-property-strandedness (#3186)
ENCD-5069 fix error in gene search (#3166)
ENCD-5118-adjust-unreplicated-experiment-audit (#3187)
ENCD-5130-Add-download-btn-to-FCC (#3179)

Release for encoded v97.0 (ubuntu18) (unreleased to production)

1.	SNO-145 handle missing _stats on request
2.	ENCD-5137-Fix-ENTEx-text-issue (#3178)
3.	ENCD-5132-update-deployment-amis (#3174)
4.	update-to-v97rc1 (#3172)
5.	update-to-v96.1 (#3171)
6.	ENCD-5071-audit-script-error-when-control-is-series (#3164)
7.	ENCD-4626-fix-test-save-change-antibody (#3145)
8.	ENCD-4365-roadmap-collection-view (#3142)
9.	ENCD-5121-doc-section-publication-data (#3162)
10.	ENCD-5073-multiple-targets-FCC (#3154)
11.	ENCD-5097-add-Ingrid-to-AntibodyCharacterization-reviewed-by (#3148)
12.	ENCD-5033-index-user-made-accounts (#3158)
13.	ENCD-4953-calculated-tags-property-experiment (#3155)
14.	ENCD-5072 Library construction platform display (#3168)
15.	SNO-142 Minor fixes for ubutnu 18 on v96x1rc1
16.	ENCD-5106-add-control-link-FCE (#3151)
17.	ENCD-5101-add-target-to-annotation-summary-page (#3165)
18.	ENCD-5124-fix-vis-indexing-failure-on-RNA-seq-annotation (#3161)
19.	ENCD-5074-exclude-single-cell-from-read-count-audit (#3153)
20.	ENCD-5083-restrict-IHEC-dbxref-to-RefEpi-and-Annotation (#3147)
21.	ENCD-5034-encyclopedia-v6-addition (#3152)
22.	SNO-141-update-osx-catalina-readme
23.	ENCD-4917-new-target-matrix (#3071)
24.	ENCD-5120-1st-post-master-merge-fix-u18-py369 (#3160)
25.	ENCD-3983-update-to-ubuntu-18
26.	ENCD-5112 Update deploy ami map for all builds
27.	SNO-140 Allow shorting uuids with flag
28.	ENCD-5075 Adding the change for depmap (#3141)
29.	SNO-139 Log detailed initial indexing times
30.	ENCD-3983-update-to-ubuntu-18
31.	ENCD-4961-make-base-amis-encd-deployment
32.	ENCD-4960-add-aws-pems-for-deployment
33.	SNO-132 Update to py37 lrowe pr with fixes
34.	ENCD-5061-echo-filenames-in-deploy-scirpt
35.	ENCD-5060-add-py-requirements-file
36.	ENCD-5059-fix-pylint-in-deploy-script
37.	ENCD-5081 add-pooled-clone-sequencing-types (#3144)
38.	ENCD-5084-draft-1 (#3149)
39.	ENCD-5096-draft-1 (#3150)
40.	ENCD-5091 Rebuilt package-lock.json (#3140)
41.	ENCD-5077 Remove unnecessary prints (#3146)

Master Release Ubuntu 18 / Python 3.76

v96.1 (unreleased) snovault 1.0.41

----------------------------------
1. SNO-142 Minor fixes for ubutnu 18 on v96x1rc1 (#3167)
2. SNO-141-update-osx-catalina-readme (#3167)
3. ENCD-5120-1st-post-master-merge-fix-u18-py369 (#3160)
4. ENCD-5112 Update deploy ami map for all builds (#3109)
5. SNO-140 Allow shorting uuids with flag (#3109)
6. SNO-139 Log detailed initial indexing times (#3109)
7. ENCD-3983-update-to-ubuntu-18 (#3109)
8. ENCD-4961-make-base-amis-encd-deployment (#3109)
9. ENCD-4960-add-aws-pems-for-deployment (#3109)
10. SNO-132 Update to py37 lrowe pr with fixes (#3109)
11. ENCD-5061-echo-filenames-in-deploy-scirpt (#3109)
12. ENCD-5060-add-py-requirements-file (#3109)
13. ENCD-5059-fix-pylint-in-deploy-script (#3109)

v96.0 (released) snovault 1.0.40

	1.	ENCD-5089-add-back-account-creation-msg (#3139)
	2.	ENCD-5088-graphlib-crash (#3137)
	3.	ENCD-5086-remove-chip-seq-matrix-from-menu (#3136)
	4.	ENCD-5047-no-dependencies-output-types (#3135)
	5.	ENCD-4943-fix-bad-ancient-URL-forwards (#3129)
	6.	ENCD-5049 add MINT mixture to library object (#3132)
	7.	ENCD-5056-computation-model-object (#3128)
	8.	ENCD-5037-valis-library-update (#3119)
	9.	ENCD-5026 toolbar updates (#3133)
	10.	ENCD-5057-add-experiment-audit-for-no-processed-data (#3126)
	11.	ENCD-5078-fcc-insert (#3134)
	12.	ENCD-5068-update-regex-pattern-for-IHEC-dbxref (#3123)
	13.	ENCD-4172 improved PublicationData embedding (#3130)
	14.	ENCD-4975-three-library-properties-restricted-to-enum (#3108)
	15.	ENCD-5054-revise-biosample-search-result-link-age-display (#3118)
	16.	ENCD-5065-account-creation-error-msg (#3110)
	17.	ENCD-5050-nanopore-file-dependency (#3121)
	18.	ENCD-5032 add reset to genome browser (#3106)
	19.	ENCD-5020-create-account-on-any-page (#3112)
	20.	ENCD-5022-ENTEx-updates (#3122)
	21.	ENCD-5053-Display target_expression_percentile (#3127)
	22.	ENCD-4948 Facet registry (#3120)
	23.	ENCD-4936-add-location-to-gene (#3083)
	24.	ENCD-5043-add-icLASER-assay (#3115)
	25.	ENCD-5055-update-audit-detail-insufficient-read-length-rna (#3116)
	26.	ENCD-5025-create-account-created-messagebox (#3107)
	27.	ENCD-5048 annotation schema change for FCC controls (#3114)
	28.	ENCD-5066-calculate-s3-uri-for-all-files (#3117)

v95.0 (released) snovault 1.0.40

	1.	ENCD-5064 update the detail message in "inconsistent genetic modification tags" audit (#3113)
	2.	ENCD-5058 fix pip version (#3111)
	3.	ENCD-4899 additions to robots.txt (#3055)
	4.	ENCD-5008 Analyses property (#3100)
	5.	ENCD-5015 functional characterization series (#3099)
	6.	ENCD-4999 Add PRO-cap assay term (#3101)
	7.	SNO-129-add-fielded-generator-response (#3077)
	8.	ENCD-5005 replace GO properties with GO links (#3098)
	9.	ENCD-5044-update-to-snovault-1-40 (#3104)
	10.	ENCD-4995 adding read index_of (#3095)
	11.	ENCD-4987 Add audits for eclip queried_RNP_size_range (#3090)
	12.	ENCD-3086-add-dataset-to-file (#2977)
	13.	ENCD-4655 remove recombinant protein category of target (#3070)
	14.	ENCD-4986-fix-summary-page-filter-miscount (#3081)
	15.	ENCD-4997-adjust-GM-schema-for-FCC-expts (#3096)
	16.	ENCD-5004-update-assay-titles-ontology (#3093)
	17.	ENCD-4956-add-content-to-schema (#3089)
	18.	ENCD-5014-new-FCE-property-target-expression-percentile (#3097)
	19.	ENCD-5013 Allow elements_reference to link to Annotations (#3086)
	20.	ENCD-5010-Reduce-min-read-length-miRNA (#3092)
	21.	ENCD-5027-fix-refseq-dbxref-link (#3087)
	22.	ENCD-4998 Revise time units pluralization (#3082)
	23.	ENCD-4951-add-4dn-expt-dbxref (#3084)
	24.	ENCD-5036 freeze setuptools for wale at v43 (#3091)
	25.	ENCD-4790 replicates in Valis (#3068)
	26.	ENCD-5023 fix advanced query search BDD test (#3088)
	27.	ENCD-5007-home-svg-chrome-bug (#3080)

v94.0 (released) snovault 1.0.39

---------------------------------------
1.	ENCD-5002 Removed month_released from facet list for scRNA series (#3074)
2.	ENCD-5001-SCREEN-link-updates (#3076)
3.	ENCD-4994-fix-broken-img-tag-appearance-ie11 (#3073)
4.	ENCD-4996-fix-IE-shading (#3075)
5.	ENCD-4993-update-snovault-1.0.39
6.	ENCD-4222 Implement ENTEx matrix (#3067)
7.	ENCD-4882 Removed month_released property from Dataset and Page (#3049)
8.	ENCD-4965-quality-metrics-now-required-property (#3064)
9.	ENCD-4983-new-file-output_type-personalized-genome-assembly (#3065)
10.	ENCD-4810 md5 self audit (#3063)
11.	ENCD-4967-broken-E11-fixes (#3043)
12.	ENCD-4812-award-link-embedded (#3069)
13.	ENCD-4971-add-TagRFP-enum-GM (#3062)
14.	ENCD-4972-calculate-FCC-control-assay-titles (#3061)
15.	ENCD-4969 Update missing raw data in replicate audit (#3046)
16.	ENCD-4922 single cell RNA series (#3066)
17.	ENCD-4859-clarify-undetermined-replication-type-audit (#3059)
18.	ENCD-4488-tighten-annotation-schema (#3045)
19.	ENCD-4984-add-ENCODE3-to-scRNA-without-controls (#3057)
20.	ENCD-4942 remove control category of target (#3058)
21.	ENCD-4872 open ENCODE4 antibody standards to ENCODE3 antibodies (#3022)
22.	ENCD-4979-fix-reference-to-HTTPFound (#3060)
23.	ENCD-4976 Remove scRNA-seq from RIN audit (#3056)
24.	ENCD-4557-limit-reviewers-cannot-edit-characterization (#3054)
25.	ENCD-4974-cricket-typo-fixes (#3048)
26.	ENCD-4966-remove-default-replicate (#3047)
27.	ENCD-4980-upgrade-pip-circleci (#3053)