v122.0

1. ENCD-6161-fix genome browser pinned files in sessionStorage (#4098)
2. ENCD-6005-region-search-display-bug-fixes (#4095)
3. ENCD-6113 FCC search updates (#4091)
4. ENCD-6129 Removing facets (#4092)
5. ENCD-6135-cart-view-update (#4089)
6. ENCD-6005-region-search-dserv-genome-browser (#4052)
7. ENCD-6136-gkm-svm-annotation-type-file-output-type (#4090)
8. ENCD-5219-add-deleted-and-inserted-gene-details (#4087)
9. ENCD-6121-add-screen-tiling-reference (#4081)
10. ENCD-6109-origin-biosample-property (#4076)
11. ENCD-6077-perturbations (#4072)
12. ENCD-6130 file detail title not showing (#4086)
13. ENCD-6067-update-ontology-slimming-terms (#4080)
14. ENCD-5687-add-replication-count-to-experiments-and-fcc-experiments (#4078)
15. ENCD-6096-remove-region-indexer (#4083)
16. ENCD-6108-controlled-cell-growth-tag (#4070)
17. ENCD-6099-audit-index-reads-no-read-structure (#4071)
18. ENCD-6102-change-regex-lot-id-product-id (#4069)
19. ENCD-6125-specify-location-constraint-in-moto-tests (#4077)
20. ENCD-5908-add-formatted-biorep-property-to-experiments-and-fcc-experiments (#4065)
21. ENCD-6105-disable-viz-btn-mouse-dev-matrix (#4066)
22. ENCD-6103-fix-rush-matrix-urls (#4067)
23. ENCD-6095-add-mEGFP-tag (#4073)

v121.0

1.	update-snovault-1.0.59 (#4026)
2.	SNO-209-move-search-code-to-independent-package (#4059)
3.	ENCD-6100 removing trailing slash for rnaget link (#4063)
4.	ENCD-6071 fragments file addition (#4061)
5.	ENCD-6090-singlecellunit-cart (#4056)
6.	ENCD-6094-update-azure-link (#4062)
7.	ENCD-6091-add-Hongkai-Ji-submission-properties (#4060)
8.	ENCD-6092 Add embedding of originated_from.biosample_ontology to Experiment (#4058)
9.	ENCD-6076-gender-symbols (#4057)
10.	ENCD-6049 pooled clone sequencing dependency (#4055)
11.	ENCD-6073-add-sparse-matrix-output-type-genome-compartment-id-analysis-step-type (#4054)
12.	ENCD-6055-FCC-series-search-update (#4039)
13.	ENCD-5981-change-filegallery-defaults (#4047)
14.	ENCD-5921-sc-paging (#4051)
15.	ENCD-6050-loci-fcc-search-list-view (#4049)
16.	SNO-206-use-redis-cache-for-rnget-view (#4045)
17.	ENCD-6084-mouse-matrix-crash (#4053)
18.	ENCD-6069-add-redacted-transcriptome-alignments (#4042)
19.	ENCD-4448-audit-annotations-without-original-files (#4048)
20.	ENCD-5984-fix-mixed-analysis-title (#4040)
21.	ENCD-5927-audit-raw-data-lacking-step-run (#4044)
22.	ENCD-6041-remove-ie11-from-babel (#4028)
23.	ENCD-6080-update-robots-txt (#4043)
24.	ENCD-6066-show-series-experiment-tables-controls (#4031)
25.	ENCD-6048-audit-CRISPR-not-in-series (#4046)
26.	ENCD-6057-reconcile-biosample-summary (#4041)
27.	ENCD-5889-brain-disease-matrix (#3996)
28.	SNO-205-allow-customization-of-default-sort (#4038)
29.	ENCD-6058-single-cell-nav (#4033)
30.	ENCD-6059-update-reagent-regex-thermo (#4034)
31.	ENCD-6064-make-elements-mapping-an-array (#4032)
32.	ENCD-6063-add-fce-table-to-reference-page (#4037)
33.	ENCD-5837-project-bio-term-name-bug (#4036)
34.	ENCD-6053-file-view-update (#4029)
35.	ENCD-5723-term-name-erasure (#4035)

v120.0

1. ENCD-6065 fix post diff table crash (#4027)
2. update-snovault-1.0.59 (#4026)
3. ENCD-6036 reset chr range in cart (#4025)
4. ENCD-6039-software-cleanup (#4018)
5. ENCD-6052-add-rnaget-search-and-report-views (#4022)
6. ENCD-6038-biosample-summary-series-header (#4017)
7. ENCD-6056-cart-upgrade-error (#4024)
8. ENCD-6024-make-search-results-targets-into-links (#4015)
9. ENCD-5876-series-updates (#4023)
10. ENCD-5851 single cell landing page (#4021)
11. ENCD-6008-convert-nuc-acid-start-quant-to-number (#4014)
12. ENCD-6047-ENTEx-annotation (#4019)
13. ENCD-5968-add-MOI-guide-type-to-GM (#3987)
14. ENCD-6045-add-david-hafler-to-alias-prefix (#4013)
15. ENCD-6046-add-RUSH-AD-internal_tags-donor (#4016)
16. ENCD-6042-search-dl-options (#4012)
17. ENCD-5724 differentiation series (#4009)
18. ENCD-5982-file-cart-views (#4011)
19. ENCD-6043-slim-perturb-snATAC-seq (#4010)
20. ENCD-6040-document-embedding-in-annotations (#4007)

v119.0

1. ENCD-5974 biosample summary summary (#4004)
2. ENCD-5990-embed-docs (#3986)
3. ENCD-6037-annotation-target (#4006)
4. ENCD-5618 encyclopedia page (#3998)
5. ENCD-5955-analysis-titles (#4002)
6. ENCD-6031-add-DHS-to-annotation-subtype (#3999)
7. ENCD-6028-visualizable-filter (#3997)
8. ENCD-5926-adjust-biosample-characterizations-audit-to-check-parents (#3958)
9. ENCD-5995-update-rnaget-ui (#3980)
10. ENCD-6032-adding-link-to-official-rnaget-api-docs (#3978)
11. ENCD-6022-add-filter-type-and-filter-value-properties (#3990)
12. ENCD-5971-split-experiments-in-disease-series (#3989)
13. ENCD-6013-bump-queue-worker get size (#3968)
14. ENCD-5994-long-read-scrna-assay-slim (#3976)
15. ENCD-5993 Exclude long read single-cell RNA-seq from audit (#3973)
16. ENCD-5969-reference-elements-sel-method (#3985)
17. ENCD-6021-allow-txt-for-sequence-barcodes-add-polyA-sites-output (#3991)
18. ENCD-6023-expression-readout-fcc-series-table (#3993)
19. ENCD-6025-cart-valis-targets (#3992)
20. ENCD-6019-increase-sts-token-expiration (#3977)
21. ENCD-6006-add-facs-expression-measurement-method (#3982)
22. ENCD-5720-target-cart-facet (#3971)
23. ENCD-5970-fcc-series-elements-references (#3974)
24. ENCD-5996-add-enum-analysis-step-type (#3979)
25. ENCD-5986-set-status-transgenic-enhancer-expt (#3981)
26. ENCD-5967-use-biosample-summary-series-tables (#3970)
27. ENCD-5965-enable-association-graph-in-series (#3949)
28. ENCD-5918-cart-analyses (#3966)
29. ENCD-6020 disable email sending (#3975)

v118.0

1. ENCD-6012-regulome-validation-error (#3969)
2. ENCD-6011-ontology-efo-bug-fix (#3967)
3. ENCD-6002-publicationdata-dl (#3965)
4. ENCD-5992-cart-analysis-dl (#3964)
5. update-snovault-1.0.58 (#3963)
6. ENCD-5886-add-ccre-default-tracks (#3960)
7. ENCD-5989-fix-analysis-embed (#3961)
8. ENCD-5949-add-file-output-types-unidirectional-bidirectional-peaks-and-entex (#3957)
9. SNO-170-avoid-rendering-from-database-3 (#3954)
10. ENCD-5776-new-batch-download-ui (#3941)
11. ENCD-5888-accept-regions-in-examined-loci-on-reference (#3959)
12. ENCD-5929-analysis-audits (#3951)
13. ENCD-5975-adjust-file-schema-ultima-fastqs (#3953)
14. ENCD-5972 entex references (#3952)
15. ENCD-5964-add-assays-update-ontology (#3942)
16. ENCD-5978-hic-qc (#3945)
17. ENCD-5980-fix-download-button (#3950)
18. ENCD-5976-nagios-configuration (#3947)
19. ENCD-5952-add-new-internal-tags (#3935)
20. ENCD-5962-avoid-results-from-stale-request (#3943)
21. ENCD-5977 pairs file addition (#3944)
22. ENCD-5939-bdd-tests (#3946)
23. ENCD-5943 Update relevant_life_stage enums for Annotation (#3936)
24. ENCD-5948-fcc-ucsc-visualization (#3938)
25. ENCD-5617-new-software-page (#3922)
26. SNO-202-python3.8.5-upgrade (#3937)
27. ENCD-5933-add-promoter-details-to-gm-reagents (#3931)
28. ENCD-5953-update-fcc-table (#3934)
29. ENCD-5690-add-azure-uri-to-file-metadata (#3939)
30. ENCD-4549-wildtype-biosample-title-update (#3927)
31. ENCD-5966-fix-series-table-target-bug (#3933)
32. ENCD-5940-cart-dataset-target (#3930)
33. ENCD-5932 fix regulome tags (#3928)
34. ENCD-5808 facet for biochemical inputs (#3869)
35. ENCD-5942-display-disease-name-on-series (#3926)
36. ENCD-5959-fix-series-page-crash (#3932)

encoded release for v117x0

v117.0

ENCD-5945-index-annotations-logging (#3920)
ENCD-5954-fix-matrix-chip-seq-urls (#3923)
ENCD-5951-annotation-labels (#3924)
ENCD-5957-wale-broken (#3925)
ENCD-5947-series-search-ban-robots (#3921)
ENCD-5903-audit-mixed-expression-measurement-methods (#3914)
ENCD-5757-multisearch-within-collections (#3917)
ENCD-5941-update-robots-txt (#3919)
ENCD-5938-control-crispr-screens-incorrectly-calculated-as-proliferation (#3918)
ENCD-5930-add-enum-to-software-type (#3909)
ENCD-5920-change-machine-size (#3915)
ENCD-5935-fix-file-audit-error (#3916)
ENCD-5912-FCC-series-search-update (#3908)
ENCD-5614-cart-dataset-filters (#3911)
ENCD-5923-fix-chromatin-genome-browser-bug (#3910)
ENCD-5917-add-guide-locations-output-type (#3913)
ENCD-5689-updates-to-chip-matrix (#3906)
ENCD-5914-rna-get-beta (#3901)
ENCD-5909-single-cell-series-UI (#3897)
ENCD-5924-deafult analysis (#3900)
ENCD-5861-add-annotation-types-subtypes-to-glossary (#3912)
ENCD-5911-update-crispr-screen-methods-in-fcc-faceting (#3907)
ENCD-4945-status-color-key (#3903)
ENCD-5919-elements-ref-embedding-to-fce (#3905)
ENCD-5898-separate-ami-demo-prod (#3879)
ENCD-5814-add-donor-to-metadata-tsv (#3899)
ENCD-5854-series-dl (#3883)
ENCD-5915-update-software-schema (#3904)
ENCD-5871-exclude-deleted-inconsistent-analysis (#3887)
ENCD-5897-add-disease-term-in-biosample-page (#3891)
ENCD-5916-encyclopedia-v6 (#3898)
ENCD-5873-remove-single-cell-classification (#3890)
ENCD-5805-collections-tag-link (#3885)

v116.0

1. update snovault 1.0.57 (#3882)
2. SNO-201-add-search-config-registry (#3855)
3. ENCD-5858-add-single-cell-units-to-series (#3858)
4. ENCD-5561-organize-pyramid-config (#3781)
5. ENCD-5896-add-MultiomicsSeries-object (#3873)
6. ENCD-5147-add-expression-measurement-method-to-examined-loci-FCE (#3876)
7. VALIS-36 remove expander (#3805)
8. ENCD-5863-speed-up-chip-matrix (#3868)
9. revert SNO-202-python3.8.5-upgrade (#3881)
11. VALIS-40-dbSNP-track (#3866)
12. ENCD-5770 add legend to browser (#3829)
13. ENCD-5892-add-ManateeDonor-object (#3872)
14. ENCD-5874-disease-series (#3875)
15. ENCD-5895-adjust-strand-specificity-display (#3871)
16. ENCD-5891-exclude-rrbs-from-audits (#3860)
17. ENCD-5902 bam mapped run type and read length (#3877)
18. ENCD-5880 analysis title (#3874)
19. ENCD-5900-fix-smallrna-cage-audit-detail (#3870)
20. ENCD-5728-add-gene-target-page (#3863)
21. ENCD-5867-add-R2C2-subreads-output-type (#3864)
22. ENCD-5830-autocomplete-rnaget-ui (#3839)
23. NCD-5840-analysis-objects-to-analyses-move-to-dataset (#3834)
24. ENCD-5820-select-better-analysis-by-default (#3809)
25. ENCD-5894-restrict-strand-specificity-requirement-to-RNA-libraries (#3867)
26. ENCD-5857 Add audits for analyses with multiple rfas or datasets (#3856)
27. ENCD-5860 Add repeat elements annotation file output type (#3852)
28. ENCD-5887-crispr-file-format-types (#3862)
29. ENCD-5804-add-ctl_type-to-FCC-n-Exp-search-pg (#3831)
30. ENCD-5865-add-ana-conesa-to-alias-regex (#3861)
31. ENCD-5834-add-default-analysis-calculation (#3842)
32. SNO-202-python3.8.5-upgrade (#3865)
33. ENCD-5885-update-snovault-link-readme (#3851)
34. ENCD-5685-stacked-buttons (#3847)
35. ENCD-5853-ihec-json-updates (#3849)
36. ENCD-5872-usable-fragments (#3846)
37. ENCD-5866-python-36-circleci (#3845)
38. ENCD-5884 Add spaces in audit details (#3850)

v115.0

1.	ENCD-5870-fix-bdd-submitter-test
2.	ENCD-5864-add-analysis-objects-to-fce (#3840)
3.	ENCD-5827-migrate-audits-to-analysis (#3813)
4.	SNO-200-remove-nonsubstring-filter-from-mapping (#3837)
5.	ENCD-5856-TSTAN-not-showing (#3835)
6.	ENCD-5828-single-cell-experiments (#3828)
7.	SNO-199-allow-customization-of-search-fields (#3841)
8.	ENCD-5825-series-files (#3836)
9.	ENCD-5806-cCRE-annotation-subtypes-and-other-file-output-types (#3838)
10.	ENCD-5154-print-base-branch-deploy (#3832)
11.	ENCD-5831-add-metadata-columns-and-small-improvements-to-rnaget-ui (#3825)
12.	ENCD-5850-fix-analysis-title-and-permission (#3824)
13.	ENCD-5750-update-glossary-with-file-output-types (#3833)
14.	ENCD-5841-remove-redundant-originated-from (#3823)
15.	ENCD-5829-allow-batch-download-from-more-dataset-pages (#3827)
16.	SNO-197-add-range-queries-and-min-max-aggs (#3812)
17.	ENCD-5847-add-azure-link (#3818)
18.	SNO-198-allow-configuration-of-reserved-search-params (#3816)
19.	SNO-138-fix-pytest-warnings (#3826)
20.	ENCD-5807 compare to literal with == instead of is in experiment_series audit (#3778)
21.	ENCD-5842 do not clone the private config repo in runcmd_all (#3821)
22.	ENCD-5844-add-unstranded-enum-to-library-objects (#3822)
23.	ENCD-5778-add-pulse-chase-series-and-pulse-chase-properties (#3817)
24.	ENCD-5843-add-disease-facet (#3815)
25.	ENCD-5833-analysis-audits (#3810)
26.	ENCD-5836 Remove duplicate definition (#3806)
27.	ENCD-5818 Remove ssh key copying from app-final.sh (#3800)

v114.0

1. ENCD-5832 Consider assembly when choosing pseudo-default files (#3804)
2. ENCD-5824-bug-fix-dnase-analysis-audits (#3801)
3. ENCD-5819-related-files (#3802)
4. update snovault 1.0.55 (#3798)
5. ENCD-5789 Cart pseudo-default files (#3786)
6. ENCD-5786-move-dnase-audits-to-analysis (#3783)
7. ENCD-5787-add-assays-GROcap-GROseq-long-read-scRNAseq-remove-snRNAseq-genotyping-HTS (#3791)
8. ENCD-5745-embed-assay-title-and-annotation-type-in-file (#3794)
9. ENCD-5718-add-rna-get-ui (#3776)
10. ENCD-5817-remove-dup-boost-dataset-award (#3797)
11. ENCD-5803-update-wgbs-vis-def (#3785)
12. ENCD-4612-add-Valis-tracks-GRCm39-M26-V33-dm3-genes-ce10-genes (#3790)
13. ENCD-5773-exp-series-tables-dnase-rna (#3789)
14. ENCD-5790-add-split-seq-library-file-terms (#3782)
15. ENCD-5167-fix-gene-search (#3795)
16. ENCD-5746-deploy-valis-03-08-21 (#3788)
17. ENCD-5729-walkme-in-menu (#3787)
18. SNO-192-update-pip-install (#3750)
19. ENCD-5775-update-biosample-summary (#3773)
20. ENCD-4931-revert-ENCD-4251 (#3784)
21. ENCD-5749-make-bigbed9-collapsible (#3741)
22. ENCD-5784-modify-pearson-audit-encode3-wgbs (#3769)
23. ENCD-5771-add-v33-m39 (#3772)
24. ENCD-5794 Add calculated property read_depth for STAR quality metric (#3770)
25. ENCD-5799-bdd-cart (#3779)
26. ENCD-5774-update-crispr-assay-calc (#3762)
27. ENCD-5792-remove-java-from-cloud-config (#3774)
28. ENCD-5753-adjust-library-linkers-add-extraction-enum (#3771)
29. ENCD-5751-improve-transgenic-enhancer-expt-facets (#3754)
30. ENCD-5732-mapped-run-type (#3748)
31. ENCD-5788-block-new-WGBS-bigBeds (#3764)
32. ENCD-5766 Add audit for differentiation series time units (#3761)
33. ENCD-5744 Display DOI of all datasets (#3760)
34. ENCD-5742-fix-valis-track-sticking (#3755)
35. ENCD-5765-add-enum-gm-introduced-tags (#3758)
36. ENCD-5764-add-pip-version-to-readme (#3747)
37. ENCD-5783-deprecrated-files-crashing-file-details (#3763)
38. ENCD-5791-add-analysis-in-annotations (#3768)
39. ENCD-5740 fix mouse colors (#3766)
40. ENCD-5793 Fix cart downloads for selected analysis and default files (#3767)

v113x0

v113.0

ENCD-5772-modify-wgbs-audit (#3751)
ENCD-5782-browser-label (#3757)
ENCD-5780-cart-analysis-crash (#3756)
ENCD-5767-fix-file-details-facets-viz-files (#3749)
Update snovault 1.0.54 (#3746)
ENCD-5726-file-gallery-analysis-display-update (#3723)
SNO-27-pip-installable (#3707)
SNO-191-pyramid-env-vars (#3738)
ENCD-4302-fix-dbxref-jest-errors (#3711)
ENCD-5711-add-regulome-output-type-to-analysis-step (#3718)
SNO-117-top-hits-search (#3710)
ENCD-5699-filter-report-by-analyses (#3744)
ENCD-5743 add glossary link (#3745)
ENCD-5717-convert-cCRE-annotation-biochemical-inputs-property (#3740)
ENCD-5736-pin-wale (#3731)
ENCD-5701-cart-analysis-selection (#3743)
ENCD-5739-fix-elasticsearch-install-circleci (#3732)
ENCD-4573-documentation-links-for-facets (#3735)
ENCD-5738-making-analysis-step-run-submittable (#3737)
ENCD-5693 clickable mouse diagram (#3733)
ENCD-5706-exempt-mixed-biosample-from-undetermined-replication-audit (#3742)
ENCD-5712-chia-pet-audits (#3734)
ENCD-5716-differentiation-series (#3720)
ENCD-5735-add-guide-quantifications-output-type (#3730)
ENCD-5705-add-audit-flag-experiments-with-inconsistent-analysis-status (#3736)
ENCD-5714-add-defect-mode-property-dnase (#3722)
ENCD-5675 Display all children of a biosample including grandchildren (#3709)
ENCD-5676-add-doi-to-dataset (#3725)
ENCD-2753-slim-embed-analysis-in-file (#3728)
ENCD-5731-add-accession-to-analysis-boost (#3726)
ENCD-5707-relax-unreplicated-audit-on-PCS (#3729)
ENCD-5725-analysis-title (#3727)
ENCD-5708-release-documents-with-released-analysis-objects (#3724)
ENCD-5612-paste-deploy-scripts-static (#3714)
ENCD-5475-fix-modal-font (#3713)
ENCD-5715-do-not-mess-with-cluster-name (#3712)
ENCD-5348 WGBS audit (#3715)
ENCD-5652-AMI-based-deployment (#3664)