fixes coverage gh action

.github/workflows/CI.yml

@@ -33,11 +33,9 @@ jobs:
     - name: Test with pytest
       run: |
         pip install .
-        python setup.py pytest --addopts "--cov ."
-#    - name: Upload coverage to Codecov
-#      uses: codecov/codecov-action@v4
-#      env:
-#        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
-#      with:
-#        fail_ci_if_error: true
-#        verbose: true
+        coverage run --branch -m pytest tests
+    - name: Upload coverage reports to Codecov
+      uses: codecov/[email protected]
+      with:
+        token: ${{ secrets.CODECOV_TOKEN }}
+        slug: jmbhughes/overlappogram

pyproject.toml

@@ -35,7 +35,7 @@ classifiers = [
 ]
 
 [project.optional-dependencies]
-test = ["pytest", "pytest-doctestplus", "pytest-cov", "ruff"]
+test = ["pytest", "pytest-doctestplus", "pytest-cov", "ruff", "coverage"]
 docs = ["sphinx", "sphinx-automodapi"]
 
 [project.urls]